Regulog IolR - Frankineae/Propionibacterineae/Pseudonocardiaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Inositol utilization |
| Effector: | |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Frankineae/Propionibacterineae/Pseudonocardiaceae
- By TF family - GntR/Others
- By pathway - Inositol utilization
| Genome | Genes | Operons |
|---|---|---|
| Actinosynnema mirum DSM 43827 | ||
| Saccharomonospora viridis DSM 43017 | ||
| Saccharopolyspora erythraea NRRL 2338 | 19 | 7 |
| Acidothermus cellulolyticus 11B | 18 | 4 |
| Frankia sp. CcI3 | ||
| Frankia sp. EAN1pec | ||
| Nakamurella multipartita DSM 44233 | 15 | 7 |
| Nocardioides sp. JS614 | ||
| Propionibacterium acnes KPA171202 | 13 | 8 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| iolG4 |
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*
Nakamurella multipartita DSM 44233 Site: position = -74 score = 4.85802 sequence = AGTTTGTCTTGACAAGTG Gene: Namu_1848: Inositol 2-dehydrogenase |
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Inositol 2-dehydrogenase |
| CRON 2. | ||||||||||
| iolY |
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Nakamurella multipartita DSM 44233 Site: position = -60 score = 4.6402 sequence = ATGATGTCAGGACATTTG Gene: Namu_5196: Inositol 2-dehydrogenase |
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Inositol 2-dehydrogenase |
| CRON 3. | ||||||||||
| iolR2 |
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Nakamurella multipartita DSM 44233 Site: position = -121 score = 5.31475 sequence = AGCTTGTCCTGACAAAGT Gene: Namu_3354: Transcriptional regulator for inositol utilization, LacI family |
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Transcriptional regulator for inositol utilization, LacI family |
| CRON 4. | ||||||||||
| iolR |
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Saccharopolyspora erythraea NRRL 2338 Site: position = -97 score = 3.81628 sequence = AATACGTTCTGTCAAAGT Gene: SACE_4660: Inositol utilization transcriptional regulator, GntR family |
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Propionibacterium acnes KPA171202 Site: position = -159 score = 4.2298 sequence = CATATGTCAATACAATTG Gene: PPA0455: Inositol utilization transcriptional regulator, GntR family |
Inositol utilization transcriptional regulator, GntR family |
| CRON 5. | ||||||||||
| tal |
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Gene: Noca_1175: Transaldolase (EC 2.2.1.2) |
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Propionibacterium acnes KPA171202 Site: position = -87 score = 4.40722 sequence = TATTTGACAGGACAAATT Gene: PPA0454: Transaldolase (EC 2.2.1.2) |
Transaldolase (EC 2.2.1.2) |
| CRON 6. | ||||||||||
| iolR3 |
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Saccharopolyspora erythraea NRRL 2338 Site: position = -119 score = 5.42223 sequence = AGTTTGTCCGGACATGCT Gene: SACE_5191: Inositol utilization transcriptional regulator, GntR family |
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Acidothermus cellulolyticus 11B Site: position = -99 score = 4.71605 sequence = ATTTTGTAAAGACATTCT Gene: Acel_1804: Inositol utilization transcriptional regulator, GntR family |
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Nakamurella multipartita DSM 44233 Site: position = -79 score = 4.20949 sequence = ACTTTGATAGGACATATA Gene: Namu_4543: Inositol utilization transcriptional regulator, GntR family |
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Inositol utilization transcriptional regulator, GntR family |
| CRON 7. | ||||||||||
| iolG |
Gene: Amir_6853: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
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2
Saccharopolyspora erythraea NRRL 2338 Gene: SACE_4657: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) Gene: SACE_5193: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
*2
Acidothermus cellulolyticus 11B Gene: Acel_1809: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) Site: position = -87 score = 3.77544 sequence = ACAAAGTCTTGACATGGC Site: position = -98 score = 4.22231 sequence = AAGATGTTATTACAAAGT Gene: Acel_1805: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
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Gene: Namu_4534: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
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*2
Propionibacterium acnes KPA171202 Site: position = -57 score = 4.07375 sequence = TATATGTCCTGTCAAATA Site: position = 7 score = 4.07533 sequence = GCTTTGTGCTAACATTAG Gene: PPA0469: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) Site: position = -65 score = 4.46119 sequence = TTTTTGACAGGACAAATG Gene: PPA0466: Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
Myo-inositol 2-dehydrogenase (EC 1.1.1.18) |
| iolTA |
Gene: Amir_6851: Inositol ABC transport system sugar-binding protein |
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Gene: Acel_1806: Inositol ABC transport system sugar-binding protein |
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Nakamurella multipartita DSM 44233 Site: position = -348 score = 5.08361 sequence = AGAATGTCAGAACAAAGT Gene: Namu_4537: Inositol ABC transport system sugar-binding protein |
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Inositol ABC transport system sugar-binding protein |
| iolTB |
Gene: Amir_6850: Inositol ABC transport system permease protein |
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Gene: Acel_1807: Inositol ABC transport system permease protein |
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Gene: Namu_4536: Inositol ABC transport system permease protein |
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Inositol ABC transport system permease protein |
| iolTC |
Gene: Amir_6849: Inositol ABC transport system ATP-binding protein |
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Gene: Acel_1808: Inositol ABC transport system ATP-binding protein |
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Gene: Namu_4535: Inositol ABC transport system ATP-binding protein |
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Inositol ABC transport system ATP-binding protein |
| iolH |
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2
Saccharopolyspora erythraea NRRL 2338 Gene: SACE_2905: putative sugar-phosphate epimerase/isomerase IolH Gene: SACE_4656: putative sugar-phosphate epimerase/isomerase IolH |
Gene: Acel_1810: putative sugar-phosphate epimerase/isomerase IolH |
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putative sugar-phosphate epimerase/isomerase IolH |
| iolG3 |
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Saccharopolyspora erythraea NRRL 2338 Site: position = -200 score = 4.91509 sequence = GCTATGTCTTGACATACG Gene: SACE_2908: Myo-inositol 2-dehydrogenase 2 (EC 1.1.1.18) |
Gene: Acel_1811: Myo-inositol 2-dehydrogenase 2 (EC 1.1.1.18) |
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Propionibacterium acnes KPA171202 Site: position = -100 score = 4.52279 sequence = TCCTTGACAGGACAAACT Gene: PPA0463: Myo-inositol 2-dehydrogenase 2 (EC 1.1.1.18) |
Myo-inositol 2-dehydrogenase 2 (EC 1.1.1.18) |
| iolE |
Gene: Amir_6852: Inosose dehydratase (EC 4.2.1.44) |
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*3
Saccharopolyspora erythraea NRRL 2338 Gene: SACE_2907: Inosose dehydratase (EC 4.2.1.44) Site: position = -124 score = 3.81628 sequence = ACTTTGACAGAACGTATT Gene: SACE_4659: Inosose dehydratase (EC 4.2.1.44) Site: position = -164 score = 4.91037 sequence = AGTATGTCAGGACCAAGT Gene: SACE_5192: Inosose dehydratase (EC 4.2.1.44) |
*2
Acidothermus cellulolyticus 11B Gene: Acel_1812: Inosose dehydratase (EC 4.2.1.44) Site: position = -27 score = 4.21339 sequence = ATATTGTCAGGTCTAACT Gene: Acel_1816: Inosose dehydratase (EC 4.2.1.44) |
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Gene: Namu_3352: Inosose dehydratase (EC 4.2.1.44) |
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*2
Propionibacterium acnes KPA171202 Site: position = -77 score = 4.07375 sequence = TATTTGACAGGACATATA Site: position = -141 score = 4.07533 sequence = CTAATGTTAGCACAAAGC Gene: PPA0468: Inosose dehydratase (EC 4.2.1.44) Gene: PPA0464: Inosose dehydratase (EC 4.2.1.44) |
Inosose dehydratase (EC 4.2.1.44) |
| SACE_2906 |
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Gene: SACE_2906: hypothetical protein |
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hypothetical protein |
| iolT |
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2
Saccharopolyspora erythraea NRRL 2338 Gene: SACE_2904: Myo-inositol transporter, MFS family Gene: SACE_4658: Myo-inositol transporter, MFS family |
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Myo-inositol transporter, MFS family |
| iolC |
Gene: Amir_6848: 5-keto-2-deoxygluconokinase (EC 2.7.1.92) |
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Saccharopolyspora erythraea NRRL 2338 Site: position = -90 score = 5.42223 sequence = AGCATGTCCGGACAAACT Gene: SACE_5189: 5-keto-2-deoxygluconokinase (EC 2.7.1.92) |
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Acidothermus cellulolyticus 11B Site: position = -83 score = 4.71605 sequence = AGAATGTCTTTACAAAAT Gene: Acel_1803: 5-keto-2-deoxygluconokinase (EC 2.7.1.92) |
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Nakamurella multipartita DSM 44233 Site: position = -143 score = 4.20949 sequence = TATATGTCCTATCAAAGT Gene: Namu_4542: 5-keto-2-deoxygluconokinase (EC 2.7.1.92) |
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Propionibacterium acnes KPA171202 Site: position = -73 score = 4.2298 sequence = CAATTGTATTGACATATG Gene: PPA0456: 5-keto-2-deoxygluconokinase (EC 2.7.1.92) |
5-keto-2-deoxygluconokinase (EC 2.7.1.92) |
| iolJ |
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Gene: SACE_5188: 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29) |
Gene: Acel_1802: 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29) |
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Gene: Namu_4541: 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29) |
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Gene: PPA0457: 5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29) |
5-keto-2-deoxy-D-gluconate-6 phosphate aldolase (EC 4.1.2.29) |
| iolB |
Gene: Amir_6847: 5-deoxy-glucuronate isomerase (EC 5.3.1.-) |
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Gene: SACE_5187: 5-deoxy-glucuronate isomerase (EC 5.3.1.-) |
Gene: Acel_1801: 5-deoxy-glucuronate isomerase (EC 5.3.1.-) |
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Gene: Namu_4540: 5-deoxy-glucuronate isomerase (EC 5.3.1.-) |
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Gene: PPA0458: 5-deoxy-glucuronate isomerase (EC 5.3.1.-) |
5-deoxy-glucuronate isomerase (EC 5.3.1.-) |
| iolD |
Gene: Amir_6846: Epi-inositol hydrolase (EC 3.7.1.-) |
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Gene: SACE_5186: Epi-inositol hydrolase (EC 3.7.1.-) |
Gene: Acel_1800: Epi-inositol hydrolase (EC 3.7.1.-) |
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Gene: Namu_4539: Epi-inositol hydrolase (EC 3.7.1.-) |
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Gene: PPA0459: Epi-inositol hydrolase (EC 3.7.1.-) |
Epi-inositol hydrolase (EC 3.7.1.-) |
| iolA |
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Gene: SACE_5185: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
Gene: Acel_1799: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
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Gene: Namu_4538: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
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Propionibacterium acnes KPA171202 Site: position = -101 score = 4.26004 sequence = TATTTGTTAGTACAAATT Site: position = -253 score = 3.79356 sequence = AACATGTTAGCACAATTG Gene: PPA0461: Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27) |
| Acel_1815 |
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Gene: Acel_1815: Oxidoreductase, short chain dehydrogenase/reductase family |
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Oxidoreductase, short chain dehydrogenase/reductase family |
| iolG2 |
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Gene: Acel_1814: Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18) |
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Nakamurella multipartita DSM 44233 Site: position = -57 score = 5.31475 sequence = ACTTTGTCAGGACAAGCT Gene: Namu_3353: Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18) |
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Myo-inositol 2-dehydrogenase 1 (EC 1.1.1.18) |
| Acel_1813 |
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Gene: Acel_1813: Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin |
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Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin |
| iolR1 |
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Gene: PPA0462: Inositol utilization transcriptional regulator, GntR family |
Inositol utilization transcriptional regulator, GntR family |
| CRON 8. | ||||||||||
| yadN |
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Saccharopolyspora erythraea NRRL 2338 Site: position = -113 score = 4.66865 sequence = CTAATGTACGGACATATT Gene: SACE_4661: Probable tautomerase (EC 5.3.2.-) |
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Probable tautomerase (EC 5.3.2.-) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |