Regulog SsuR - Corynebacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	ROK
Regulation mode:	activator
Biological process:	Sulfur metabolism
Effector:	Sulfite; Sulfate
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 6 sites [see more]

Member of regulog collections

By taxonomy - Corynebacteriaceae
By TF family - ROK
By effector - Sulfite
By effector - Sulfate
By pathway - Sulfur metabolism

Statistics of regulated genes
Genome	Genes	Operons
Corynebacterium amycolatum SK46	4	2
Corynebacterium aurimucosum ATCC 700975
Corynebacterium diphtheriae NCTC 13129
Corynebacterium efficiens YS-314
Corynebacterium glutamicum ATCC 13032	9	4
Corynebacterium jeikeium K411
Corynebacterium kroppenstedtii DSM 44385
Corynebacterium urealyticum DSM 7109

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
ssuR	* Corynebacterium amycolatum SK46 Site: position = -104 score = 4.60107 sequence = TTTTACAACGTGAATAT Gene: CORAM0001_0385: Sulfur metabolism transcriptional regulator SsuR, ROK family	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314	Corynebacterium glutamicum ATCC 13032 Gene: cg0012: Sulfur metabolism transcriptional regulator SsuR, ROK family	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Sulfur metabolism transcriptional regulator SsuR, ROK family

CRON 2.
ssuD	* Corynebacterium amycolatum SK46 Site: position = -59 score = 4.60107 sequence = ATATTCACGTTGTAAAA Gene: CORAM0001_0384: Alkanesulfonate monoxygenase	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314	2 Corynebacterium glutamicum ATCC 13032* Site: position = -58 score = 4.21719 sequence = AGTTTCACGCTGGTTGA Gene: cg1156: Alkanesulfonate monoxygenase Site: position = -59 score = 4.66924 sequence = ATATCCAGCCCGAAAAT Gene: cg1376: Alkanesulfonate monoxygenase	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Alkanesulfonate monoxygenase
ssuC	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314	Corynebacterium glutamicum ATCC 13032 Gene: cg1377: Sulfonate ABC transporter, permease protein	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Sulfonate ABC transporter, permease protein
ssuB	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314	Corynebacterium glutamicum ATCC 13032 Gene: cg1379: Sulfonate ABC transporter, ATP-binding protein	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Sulfonate ABC transporter, ATP-binding protein
ssuA	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314	Corynebacterium glutamicum ATCC 13032 Gene: cg1380: Sulfonate ABC transporter, substrate-binding protein	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Sulfonate ABC transporter, substrate-binding protein
seuA	Corynebacterium amycolatum SK46 Gene: CORAM0001_0382: Predicted monooxygenase	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314	* Corynebacterium glutamicum ATCC 13032 Site: position = -99 score = 4.72932 sequence = TCATTCAGGGTGAATGC Gene: cg1151: Predicted monooxygenase	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Predicted monooxygenase
seuB	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314	Corynebacterium glutamicum ATCC 13032 Gene: cg1152: Predicted monooxygenase	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Predicted monooxygenase
seuC	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314	Corynebacterium glutamicum ATCC 13032 Gene: cg1153: Predicted monooxygenase	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Predicted monooxygenase
ssuI	Corynebacterium amycolatum SK46 Gene: CORAM0001_0383: Predicted flavin-dependent reductase	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314	* Corynebacterium glutamicum ATCC 13032 Site: position = -58 score = 4.31154 sequence = ATATCCAATATGGAAGA Gene: cg1147: Predicted flavin-dependent reductase	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Predicted flavin-dependent reductase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog SsuR - Corynebacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --