Regulog Cg1143 - Corynebacteriaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:
Effector:
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 13 sites [see more]

Member of regulog collections

By taxonomy - Corynebacteriaceae
By TF family - GntR/Others

Statistics of regulated genes
Genome	Genes	Operons
Corynebacterium amycolatum SK46	3	2
Corynebacterium aurimucosum ATCC 700975	6	2
Corynebacterium diphtheriae NCTC 13129
Corynebacterium efficiens YS-314	5	2
Corynebacterium glutamicum ATCC 13032	6	3
Corynebacterium jeikeium K411	6	2
Corynebacterium kroppenstedtii DSM 44385
Corynebacterium urealyticum DSM 7109	6	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
COG1914	* Corynebacterium amycolatum SK46 Site: position = -91 score = 6.31363 sequence = ACATTGTTCAACAATCT Gene: CORAM0001_0544: Mn2+ and Fe2+ transporters of the NRAMP family	* Corynebacterium aurimucosum ATCC 700975 Site: position = -69 score = 5.87607 sequence = AGATTGTTCAACAACCC Gene: cauri_0587: Mn2+ and Fe2+ transporters of the NRAMP family	Corynebacterium diphtheriae NCTC 13129	* Corynebacterium efficiens YS-314 Site: position = -34 score = 6.19719 sequence = ACATTGTTGAACAATCC Gene: CE1067: Mn2+ and Fe2+ transporters of the NRAMP family	* Corynebacterium glutamicum ATCC 13032 Site: position = -76 score = 6.44244 sequence = AGATTGTTCAACAATCT Gene: cg1142: Mn2+ and Fe2+ transporters of the NRAMP family	* Corynebacterium jeikeium K411 Site: position = -55 score = 5.50048 sequence = GGATTGTTGAACAACAT Gene: jk0402: Mn2+ and Fe2+ transporters of the NRAMP family	Corynebacterium kroppenstedtii DSM 44385	* Corynebacterium urealyticum DSM 7109 Site: position = -55 score = 4.90057 sequence = TCTTCGTTGAACAATCC Gene: cur_1582: Mn2+ and Fe2+ transporters of the NRAMP family	Mn2+ and Fe2+ transporters of the NRAMP family
COG1540	Corynebacterium amycolatum SK46 Gene: CORAM0001_0545: Uncharacterized proteins, homologs of lactam utilization protein B	* Corynebacterium aurimucosum ATCC 700975 Site: position = -46 score = 6.0336 sequence = AGATTGTTCAACAATTC Gene: cauri_0592: Uncharacterized proteins, homologs of lactam utilization protein B	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314 Gene: CE1066: Uncharacterized proteins, homologs of lactam utilization protein B	Corynebacterium glutamicum ATCC 13032 Gene: cg1141: Uncharacterized proteins, homologs of lactam utilization protein B	* Corynebacterium jeikeium K411 Site: position = -68 score = 6.19719 sequence = ACATTGTTGAACAATCC Gene: jk0407: Uncharacterized proteins, homologs of lactam utilization protein B	Corynebacterium kroppenstedtii DSM 44385	* Corynebacterium urealyticum DSM 7109 Site: position = -35 score = 5.1996 sequence = GTACTGTTCAACAATTT Gene: cur_1577: Uncharacterized proteins, homologs of lactam utilization protein B	Uncharacterized proteins, homologs of lactam utilization protein B
alhA	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975 Gene: cauri_0591: Putative allophanate hydrolase 2, subunits 1 and 2 fusion (EC 3.5.1.54)	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314 Gene: CE1065: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)	Corynebacterium glutamicum ATCC 13032 Gene: cg1140: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)	Corynebacterium jeikeium K411 Gene: jk0406: Putative allophanate hydrolase 2, subunits 1 and 2 fusion (EC 3.5.1.54)	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109 Gene: cur_1578: Putative allophanate hydrolase 2, subunits 1 and 2 fusion (EC 3.5.1.54)	Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)
alhB	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314 Gene: CE1064: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54)	Corynebacterium glutamicum ATCC 13032 Gene: cg1139: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54)	Corynebacterium jeikeium K411	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109	Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54)
alhC	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975 Gene: cauri_0590: Urea carboxylase (EC 6.3.4.6)	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314	Corynebacterium glutamicum ATCC 13032	Corynebacterium jeikeium K411 Gene: jk0405: Urea carboxylase (EC 6.3.4.6)	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109 Gene: cur_1579: Urea carboxylase (EC 6.3.4.6)	Urea carboxylase (EC 6.3.4.6)
Cg1143	* Corynebacterium amycolatum SK46 Site: position = -74 score = 6.31363 sequence = AGATTGTTGAACAATGT Gene: CORAM0001_0543: Transcriptional regulator, GntR family	Corynebacterium aurimucosum ATCC 700975 Gene: cauri_0589: Transcriptional regulator, GntR family	Corynebacterium diphtheriae NCTC 13129	* Corynebacterium efficiens YS-314 Site: position = -47 score = 6.19719 sequence = GGATTGTTCAACAATGT Gene: CE1068: Transcriptional regulator, GntR family	* Corynebacterium glutamicum ATCC 13032 Site: position = -151 score = 6.44244 sequence = AGATTGTTGAACAATCT Gene: cg1143: Transcriptional regulator, GntR family	Corynebacterium jeikeium K411 Gene: jk0404: Transcriptional regulator, GntR family	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109 Gene: cur_1580: Transcriptional regulator, GntR family	Transcriptional regulator, GntR family
COG4336	Corynebacterium amycolatum SK46	Corynebacterium aurimucosum ATCC 700975 Gene: cauri_0588: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase	Corynebacterium diphtheriae NCTC 13129	Corynebacterium efficiens YS-314	* Corynebacterium glutamicum ATCC 13032 Site: position = 2 score = 5.2828 sequence = GAATCGTTCAACAATTT Gene: cg2803: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase	Corynebacterium jeikeium K411 Gene: jk0403: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase	Corynebacterium kroppenstedtii DSM 44385	Corynebacterium urealyticum DSM 7109 Gene: cur_1581: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase	hypothetical protein possibly connected to lactam utilization and allophanate hydrolase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Cg1143 - Corynebacteriaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --