Regulog PhnR2 - Comamonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:	Phosphonoacetate utilization; Phosphonate utilization; 2-aminoethylphosphonate utilization
Effector:	2-aminoethylphosphonate
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 6 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By trascription factor - PhnR
By TF family - GntR/Others
By effector - 2-aminoethylphosphonate
By pathway - Phosphonoacetate utilization
By pathway - Phosphonate utilization
By pathway - 2-aminoethylphosphonate utilization

Statistics of regulated genes
Genome	Genes	Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1
Delftia acidovorans SPH-1
Leptothrix cholodnii SP-6
Methylibium petroleiphilum PM1
Polaromonas naphthalenivorans CJ2
Polaromonas sp. JS666	11	4
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110
Verminephrobacter eiseniae EF01-2	5	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
phnR2	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	2 Polaromonas sp. JS666* Site: position = -68 score = 5.22113 sequence = ATTGTTGACAAT Gene: Bpro_3219: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family Site: position = -30 score = 4.76136 sequence = ATTGTTGACATT Gene: Bpro_4693: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	* Verminephrobacter eiseniae EF01-2 Site: position = 6 score = 4.98385 sequence = ACTGTTGACAAT Gene: Veis_1095: 2-aminoethylphosphonate uptake and metabolism regulator, GntR family	2-aminoethylphosphonate uptake and metabolism regulator, GntR family
phnA	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	2 Polaromonas sp. JS666 Gene: Bpro_3220: Phosphonoacetate hydrolase (EC 3.11.1.2) Gene: Bpro_4692: Phosphonoacetate hydrolase (EC 3.11.1.2)	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2 Gene: Veis_1096: Phosphonoacetate hydrolase (EC 3.11.1.2)	Phosphonoacetate hydrolase (EC 3.11.1.2)
gap	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	2 Polaromonas sp. JS666 Gene: Bpro_4691: NADP-dependent glyceraldehyde-3-phosphate dehydrogenase Gene: Bpro_3221: NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2 Gene: Veis_1097: NADP-dependent glyceraldehyde-3-phosphate dehydrogenase	NADP-dependent glyceraldehyde-3-phosphate dehydrogenase
Bpro_3222	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_3222: Alanine dehydrogenase (EC 1.4.1.1)	Rhodoferax ferrireducens DSM 15236 Gene: Rfer_4054: Alanine dehydrogenase (EC 1.4.1.1)	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	Alanine dehydrogenase (EC 1.4.1.1)

CRON 2.
phnS	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	* Polaromonas sp. JS666 Site: position = -161 score = 4.76136 sequence = AATGTCAACAAT Gene: Bpro_4694: 2-aminoethylphosphonate ABC transport system, periplasmic component	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	* Verminephrobacter eiseniae EF01-2 Site: position = -170 score = 4.74657 sequence = ACTGTTGACAGT Gene: Veis_0970: 2-aminoethylphosphonate ABC transport system, periplasmic component	2-aminoethylphosphonate ABC transport system, periplasmic component
phnT	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	* Polaromonas sp. JS666 Site: position = -148 score = 5.22113 sequence = ATTGTCAACAAT Gene: Bpro_3218: 2-aminoethylphosphonate ABC transporter, ATP-binding protein	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2 Gene: Veis_0969: 2-aminoethylphosphonate ABC transporter, ATP-binding protein	2-aminoethylphosphonate ABC transporter, ATP-binding protein
phnU	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_3217: 2-aminoethylphosphonate ABC transporter permease component	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2 Gene: Veis_0968: 2-aminoethylphosphonate ABC transporter permease component	2-aminoethylphosphonate ABC transporter permease component
phnW	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666 Gene: Bpro_3216: 2-aminoethylphosphonate--pyruvate aminotransferase (EC 2.6.1.37)	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2 Gene: Veis_0967: 2-aminoethylphosphonate--pyruvate aminotransferase (EC 2.6.1.37)	2-aminoethylphosphonate--pyruvate aminotransferase (EC 2.6.1.37)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PhnR2 - Comamonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --