Regulog Daci_3836 - Comamonadaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Beta
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 8 sites [see more]

Member of regulog collections

By taxonomy - Comamonadaceae
By TF family - GntR/Others

Statistics of regulated genes
Genome	Genes	Operons
Acidovorax avenae subsp. citrulli AAC00-1
Acidovorax sp. JS42
Comamonas testosteroni KF-1	2	1
Delftia acidovorans SPH-1	1	1
Leptothrix cholodnii SP-6	12	1
Methylibium petroleiphilum PM1	2	2
Polaromonas naphthalenivorans CJ2
Polaromonas sp. JS666
Rhodoferax ferrireducens DSM 15236
Variovorax paradoxus S110	10	1
Verminephrobacter eiseniae EF01-2	10	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes												Function

CRON 1.
uahA	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	* Comamonas testosteroni KF-1 Site: position = -25 score = 4.25126 sequence = TCTTGTATACATTT Gene: CtesDRAFT_2681: Allophanate hydrolase (EC 3.5.1.54)	Delftia acidovorans SPH-1	* Leptothrix cholodnii SP-6 Site: position = 13 score = 4.74733 sequence = TGTTGTATACCAGT Gene: Lcho_3031: Allophanate hydrolase (EC 3.5.1.54)	* Methylibium petroleiphilum PM1 Site: position = -33 score = 5.10422 sequence = TCTGGTACACAAGA Gene: Mpe_A0773: Allophanate hydrolase (EC 3.5.1.54)	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	* Variovorax paradoxus S110 Site: position = -25 score = 5.02311 sequence = ACTTGTACACAAGT Gene: Vapar_0265: Allophanate hydrolase (EC 3.5.1.54)	* Verminephrobacter eiseniae EF01-2 Site: position = -47 score = 4.76439 sequence = GCTGGGATACAAGA Gene: Veis_0832: Allophanate hydrolase (EC 3.5.1.54)	Allophanate hydrolase (EC 3.5.1.54)
Lcho_3030	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_3030: hypothetical protein	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	hypothetical protein
Lcho_3029	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_3029: hypothetical protein	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	hypothetical protein
gatA	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_3028: amidase AtzE family	Methylibium petroleiphilum PM1 Gene: Mpe_A0772: amidase AtzE family	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	amidase AtzE family
Lcho_3027	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_3027: putative protein for oxalurate utilization	Methylibium petroleiphilum PM1 Gene: Mpe_A0771: putative protein for oxalurate utilization	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110	Verminephrobacter eiseniae EF01-2	putative protein for oxalurate utilization
Lcho_3026	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_3026: ABC transporter, periplasmic ligand binding protein, Bmp family	* Methylibium petroleiphilum PM1 Site: position = -96 score = 4.82488 sequence = TCTTGTATACCAAT Gene: Mpe_A0769: ABC transporter, periplasmic ligand binding protein, Bmp family	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_0270: ABC transporter, periplasmic ligand binding protein, Bmp family	* Verminephrobacter eiseniae EF01-2 Site: position = -76 score = 5.22732 sequence = TCTTGAATACAAGA Gene: Veis_0836: ABC transporter, periplasmic ligand binding protein, Bmp family	ABC transporter, periplasmic ligand binding protein, Bmp family
Lcho_3025	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_3025: ABC transporter, permease protein	Methylibium petroleiphilum PM1 Gene: Mpe_A0768: ABC transporter, permease protein	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_0271: ABC transporter, permease protein	Verminephrobacter eiseniae EF01-2 Gene: Veis_0837: ABC transporter, permease protein	ABC transporter, permease protein
Lcho_3024	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_3024: ABC transporter, permease protein	Methylibium petroleiphilum PM1 Gene: Mpe_A0767: ABC transporter, permease protein	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_0272: ABC transporter, permease protein	Verminephrobacter eiseniae EF01-2 Gene: Veis_0838: ABC transporter, permease protein	ABC transporter, permease protein
Lcho_3023	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_3023: Isochorismatase hydrolase (EC 3.3.2.1)	Methylibium petroleiphilum PM1 Gene: Mpe_A0766: Isochorismatase hydrolase (EC 3.3.2.1)	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_0273: Isochorismatase hydrolase (EC 3.3.2.1)	Verminephrobacter eiseniae EF01-2 Gene: Veis_0839: Isochorismatase hydrolase (EC 3.3.2.1)	Isochorismatase hydrolase (EC 3.3.2.1)
Lcho_3022	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_3022: ABC transporter ATP-binding protein	Methylibium petroleiphilum PM1 Gene: Mpe_A0765: ABC transporter ATP-binding protein	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_0274: ABC transporter ATP-binding protein	Verminephrobacter eiseniae EF01-2 Gene: Veis_0840: ABC transporter ATP-binding protein	ABC transporter ATP-binding protein
Lcho_3021	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6 Gene: Lcho_3021: Isochorismatase hydrolase (EC 3.3.2.1)	Methylibium petroleiphilum PM1 Gene: Mpe_A0764: Isochorismatase hydrolase (EC 3.3.2.1)	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_0275: Isochorismatase hydrolase (EC 3.3.2.1)	Verminephrobacter eiseniae EF01-2 Gene: Veis_1649: Isochorismatase hydrolase (EC 3.3.2.1)	Isochorismatase hydrolase (EC 3.3.2.1)
Daci_3836	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1 Gene: CtesDRAFT_2682: Transcriptional regulator, GntR family	* Delftia acidovorans SPH-1 Site: position = -33 score = 5.16093 sequence = ACTTGTGTACAAGA Gene: Daci_3836: Transcriptional regulator, GntR family	Leptothrix cholodnii SP-6 Gene: Lcho_3020: Transcriptional regulator, GntR family	Methylibium petroleiphilum PM1 Gene: Mpe_A0770: Transcriptional regulator, GntR family	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_0276: Transcriptional regulator, GntR family	Verminephrobacter eiseniae EF01-2 Gene: Veis_0841: Transcriptional regulator, GntR family	Transcriptional regulator, GntR family
Vapar_0266	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_0266: ABC transporter substrate binding protein, periplasmic component	Verminephrobacter eiseniae EF01-2 Gene: Veis_0833: ABC transporter substrate binding protein, periplasmic component	ABC transporter substrate binding protein, periplasmic component
Vapar_0267	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_0267: ABC transporter, permease protein	Verminephrobacter eiseniae EF01-2 Gene: Veis_0834: ABC transporter, permease protein	ABC transporter, permease protein
Vapar_0268	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_0268: ABC transporter ATP-binding protein	Verminephrobacter eiseniae EF01-2 Gene: Veis_0835: ABC transporter ATP-binding protein	ABC transporter ATP-binding protein
Vapar_0269	Acidovorax avenae subsp. citrulli AAC00-1	Acidovorax sp. JS42	Comamonas testosteroni KF-1	Delftia acidovorans SPH-1	Leptothrix cholodnii SP-6	Methylibium petroleiphilum PM1	Polaromonas naphthalenivorans CJ2	Polaromonas sp. JS666	Rhodoferax ferrireducens DSM 15236	Variovorax paradoxus S110 Gene: Vapar_0269: hypothetical protein	Verminephrobacter eiseniae EF01-2	hypothetical protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Daci_3836 - Comamonadaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --