Regulog Daci_3836 - Comamonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By TF family - GntR/Others
| Genome | Genes | Operons |
|---|---|---|
| Acidovorax avenae subsp. citrulli AAC00-1 | ||
| Acidovorax sp. JS42 | ||
| Comamonas testosteroni KF-1 | 2 | 1 |
| Delftia acidovorans SPH-1 | 1 | 1 |
| Leptothrix cholodnii SP-6 | 12 | 1 |
| Methylibium petroleiphilum PM1 | 2 | 2 |
| Polaromonas naphthalenivorans CJ2 | ||
| Polaromonas sp. JS666 | ||
| Rhodoferax ferrireducens DSM 15236 | ||
| Variovorax paradoxus S110 | 10 | 1 |
| Verminephrobacter eiseniae EF01-2 | 10 | 2 |
| Genes | Function | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||
| uahA |
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Comamonas testosteroni KF-1 Site: position = -25 score = 4.25126 sequence = TCTTGTATACATTT Gene: CtesDRAFT_2681: Allophanate hydrolase (EC 3.5.1.54) |
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*
Leptothrix cholodnii SP-6 Site: position = 13 score = 4.74733 sequence = TGTTGTATACCAGT Gene: Lcho_3031: Allophanate hydrolase (EC 3.5.1.54) |
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Methylibium petroleiphilum PM1 Site: position = -33 score = 5.10422 sequence = TCTGGTACACAAGA Gene: Mpe_A0773: Allophanate hydrolase (EC 3.5.1.54) |
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*
Variovorax paradoxus S110 Site: position = -25 score = 5.02311 sequence = ACTTGTACACAAGT Gene: Vapar_0265: Allophanate hydrolase (EC 3.5.1.54) |
*
Verminephrobacter eiseniae EF01-2 Site: position = -47 score = 4.76439 sequence = GCTGGGATACAAGA Gene: Veis_0832: Allophanate hydrolase (EC 3.5.1.54) |
Allophanate hydrolase (EC 3.5.1.54) |
| Lcho_3030 |
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Gene: Lcho_3030: hypothetical protein |
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hypothetical protein |
| Lcho_3029 |
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Gene: Lcho_3029: hypothetical protein |
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hypothetical protein |
| gatA |
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Gene: Lcho_3028: amidase AtzE family |
Gene: Mpe_A0772: amidase AtzE family |
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amidase AtzE family |
| Lcho_3027 |
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Gene: Lcho_3027: putative protein for oxalurate utilization |
Gene: Mpe_A0771: putative protein for oxalurate utilization |
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putative protein for oxalurate utilization |
| Lcho_3026 |
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Gene: Lcho_3026: ABC transporter, periplasmic ligand binding protein, Bmp family |
*
Methylibium petroleiphilum PM1 Site: position = -96 score = 4.82488 sequence = TCTTGTATACCAAT Gene: Mpe_A0769: ABC transporter, periplasmic ligand binding protein, Bmp family |
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Gene: Vapar_0270: ABC transporter, periplasmic ligand binding protein, Bmp family |
*
Verminephrobacter eiseniae EF01-2 Site: position = -76 score = 5.22732 sequence = TCTTGAATACAAGA Gene: Veis_0836: ABC transporter, periplasmic ligand binding protein, Bmp family |
ABC transporter, periplasmic ligand binding protein, Bmp family |
| Lcho_3025 |
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Gene: Lcho_3025: ABC transporter, permease protein |
Gene: Mpe_A0768: ABC transporter, permease protein |
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Gene: Vapar_0271: ABC transporter, permease protein |
Gene: Veis_0837: ABC transporter, permease protein |
ABC transporter, permease protein |
| Lcho_3024 |
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Gene: Lcho_3024: ABC transporter, permease protein |
Gene: Mpe_A0767: ABC transporter, permease protein |
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Gene: Vapar_0272: ABC transporter, permease protein |
Gene: Veis_0838: ABC transporter, permease protein |
ABC transporter, permease protein |
| Lcho_3023 |
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Gene: Lcho_3023: Isochorismatase hydrolase (EC 3.3.2.1) |
Gene: Mpe_A0766: Isochorismatase hydrolase (EC 3.3.2.1) |
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Gene: Vapar_0273: Isochorismatase hydrolase (EC 3.3.2.1) |
Gene: Veis_0839: Isochorismatase hydrolase (EC 3.3.2.1) |
Isochorismatase hydrolase (EC 3.3.2.1) |
| Lcho_3022 |
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Gene: Lcho_3022: ABC transporter ATP-binding protein |
Gene: Mpe_A0765: ABC transporter ATP-binding protein |
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Gene: Vapar_0274: ABC transporter ATP-binding protein |
Gene: Veis_0840: ABC transporter ATP-binding protein |
ABC transporter ATP-binding protein |
| Lcho_3021 |
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Gene: Lcho_3021: Isochorismatase hydrolase (EC 3.3.2.1) |
Gene: Mpe_A0764: Isochorismatase hydrolase (EC 3.3.2.1) |
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Gene: Vapar_0275: Isochorismatase hydrolase (EC 3.3.2.1) |
Gene: Veis_1649: Isochorismatase hydrolase (EC 3.3.2.1) |
Isochorismatase hydrolase (EC 3.3.2.1) |
| Daci_3836 |
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Gene: CtesDRAFT_2682: Transcriptional regulator, GntR family |
*
Delftia acidovorans SPH-1 Site: position = -33 score = 5.16093 sequence = ACTTGTGTACAAGA Gene: Daci_3836: Transcriptional regulator, GntR family |
Gene: Lcho_3020: Transcriptional regulator, GntR family |
Gene: Mpe_A0770: Transcriptional regulator, GntR family |
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Gene: Vapar_0276: Transcriptional regulator, GntR family |
Gene: Veis_0841: Transcriptional regulator, GntR family |
Transcriptional regulator, GntR family |
| Vapar_0266 |
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Gene: Vapar_0266: ABC transporter substrate binding protein, periplasmic component |
Gene: Veis_0833: ABC transporter substrate binding protein, periplasmic component |
ABC transporter substrate binding protein, periplasmic component |
| Vapar_0267 |
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Gene: Vapar_0267: ABC transporter, permease protein |
Gene: Veis_0834: ABC transporter, permease protein |
ABC transporter, permease protein |
| Vapar_0268 |
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Gene: Vapar_0268: ABC transporter ATP-binding protein |
Gene: Veis_0835: ABC transporter ATP-binding protein |
ABC transporter ATP-binding protein |
| Vapar_0269 |
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Gene: Vapar_0269: hypothetical protein |
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hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |