Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog PrpR - Alcaligenaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Methylcitrate utilization
Effector: 2-methylcitrate
Phylum: Proteobacteria/Beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 17 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bordetella avium 197N 6 3
Bordetella bronchiseptica RB50 3 3
Bordetella petrii DSM 12804 4 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
prpR
*
Bordetella avium 197N

Site:
position = -12
score = 4.22781
sequence = ATTGTCAACACA

Site:
position = -75
score = 4.91705
sequence = ATTGTTGACAAT

Gene: BAV2731: Propionate catabolism transcriptional regulator, GntR family
 
Bordetella bronchiseptica RB50
*
Bordetella petrii DSM 12804

Site:
position = -72
score = 5.03937
sequence = ATTGTCGACAAT

Site:
position = -9
score = 3.68605
sequence = ATTGTCAACATG

Gene: Bpet1813: Propionate catabolism transcriptional regulator, GntR family
Propionate catabolism transcriptional regulator, GntR family
acnD
 
Bordetella avium 197N

Gene: BAV2732: Aconitate hydratase (EC 4.2.1.3)/2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Bordetella bronchiseptica RB50

Gene: BB3687: Aconitate hydratase (EC 4.2.1.3)/2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
 
Bordetella petrii DSM 12804

Gene: Bpet1814: Aconitate hydratase (EC 4.2.1.3)/2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
Aconitate hydratase (EC 4.2.1.3)/2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79)
prpF
 
Bordetella avium 197N

Gene: BAV2733: PrpF protein involved in 2-methylcitrate cycle
 
Bordetella bronchiseptica RB50

Gene: BB3688: PrpF protein involved in 2-methylcitrate cycle
 
Bordetella petrii DSM 12804

Gene: Bpet1815: PrpF protein involved in 2-methylcitrate cycle
PrpF protein involved in 2-methylcitrate cycle
 
CRON 2.
prpD
 
Bordetella avium 197N
 
Bordetella bronchiseptica RB50

Gene: BB3689: 2-methylcitrate dehydratase (EC 4.2.1.79)
*
Bordetella petrii DSM 12804

Site:
position = -170
score = 3.68605
sequence = CATGTTGACAAT

Site:
position = -107
score = 5.03937
sequence = ATTGTCGACAAT

Gene: Bpet1812: 2-methylcitrate dehydratase (EC 4.2.1.79)
2-methylcitrate dehydratase (EC 4.2.1.79)
 
CRON 3.
prpR
*
Bordetella avium 197N

Site:
position = -241
score = 4.96893
sequence = AGTGTCAACACT

Site:
position = -12
score = 4.23472
sequence = GCTGTTAACACT

Site:
position = -43
score = 4.55728
sequence = AGAGTTGACACT

Gene: BAV0624: Propionate catabolism transcriptional regulator, GntR family
*
Bordetella bronchiseptica RB50

Site:
position = -39
score = 4.55728
sequence = AGAGTTGACACT

Gene: BB1351: Propionate catabolism transcriptional regulator, GntR family
 
Bordetella petrii DSM 12804
Propionate catabolism transcriptional regulator, GntR family
BAV0623
 
Bordetella avium 197N

Gene: BAV0623: carboxyvinyl-carboxyphosphonate phosphorylmutase( EC:2.7.8.23 )
*
Bordetella bronchiseptica RB50

Site:
position = -182
score = 4.78915
sequence = ACTGTCAACAGT

Site:
position = -89
score = 4.55728
sequence = AGAGTTGACACT

Gene: BB1341: carboxyvinyl-carboxyphosphonate phosphorylmutase( EC:2.7.8.23 )
 
Bordetella petrii DSM 12804
carboxyvinyl-carboxyphosphonate phosphorylmutase( EC:2.7.8.23 )
 
CRON 4.
acnA
*
Bordetella avium 197N

Site:
position = -32
score = 4.96893
sequence = AGTGTTGACACT

Site:
position = -261
score = 4.23472
sequence = AGTGTTAACAGC

Site:
position = -230
score = 4.55728
sequence = AGTGTCAACTCT

Gene: BAV0625: Aconitate hydratase (EC 4.2.1.3)
*
Bordetella bronchiseptica RB50

Site:
position = -122
score = 4.55728
sequence = AGTGTCAACTCT

Site:
position = -29
score = 4.78915
sequence = ACTGTTGACAGT

Gene: BB1342: Aconitate hydratase (EC 4.2.1.3)
 
Bordetella petrii DSM 12804
Aconitate hydratase (EC 4.2.1.3)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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