Regulog PrpR - Alcaligenaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | Methylcitrate utilization |
| Effector: | 2-methylcitrate |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Alcaligenaceae
- By TF family - GntR/Others
- By effector - 2-methylcitrate
- By pathway - Methylcitrate utilization
| Genome | Genes | Operons |
|---|---|---|
| Bordetella avium 197N | 6 | 3 |
| Bordetella bronchiseptica RB50 | 3 | 3 |
| Bordetella petrii DSM 12804 | 4 | 2 |
| Genes | Function | |||
|---|---|---|---|---|
| CRON 1. | ||||
| prpR |
*
Bordetella avium 197N Site: position = -12 score = 4.22781 sequence = ATTGTCAACACA Site: position = -75 score = 4.91705 sequence = ATTGTTGACAAT Gene: BAV2731: Propionate catabolism transcriptional regulator, GntR family |
|
*
Bordetella petrii DSM 12804 Site: position = -72 score = 5.03937 sequence = ATTGTCGACAAT Site: position = -9 score = 3.68605 sequence = ATTGTCAACATG Gene: Bpet1813: Propionate catabolism transcriptional regulator, GntR family |
Propionate catabolism transcriptional regulator, GntR family |
| acnD |
Gene: BAV2732: Aconitate hydratase (EC 4.2.1.3)/2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) |
Gene: BB3687: Aconitate hydratase (EC 4.2.1.3)/2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) |
Gene: Bpet1814: Aconitate hydratase (EC 4.2.1.3)/2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) |
Aconitate hydratase (EC 4.2.1.3)/2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) |
| prpF |
Gene: BAV2733: PrpF protein involved in 2-methylcitrate cycle |
Gene: BB3688: PrpF protein involved in 2-methylcitrate cycle |
Gene: Bpet1815: PrpF protein involved in 2-methylcitrate cycle |
PrpF protein involved in 2-methylcitrate cycle |
| CRON 2. | ||||
| prpD |
|
Gene: BB3689: 2-methylcitrate dehydratase (EC 4.2.1.79) |
*
Bordetella petrii DSM 12804 Site: position = -170 score = 3.68605 sequence = CATGTTGACAAT Site: position = -107 score = 5.03937 sequence = ATTGTCGACAAT Gene: Bpet1812: 2-methylcitrate dehydratase (EC 4.2.1.79) |
2-methylcitrate dehydratase (EC 4.2.1.79) |
| CRON 3. | ||||
| prpR |
*
Bordetella avium 197N Site: position = -241 score = 4.96893 sequence = AGTGTCAACACT Site: position = -12 score = 4.23472 sequence = GCTGTTAACACT Site: position = -43 score = 4.55728 sequence = AGAGTTGACACT Gene: BAV0624: Propionate catabolism transcriptional regulator, GntR family |
*
Bordetella bronchiseptica RB50 Site: position = -39 score = 4.55728 sequence = AGAGTTGACACT Gene: BB1351: Propionate catabolism transcriptional regulator, GntR family |
|
Propionate catabolism transcriptional regulator, GntR family |
| BAV0623 |
Gene: BAV0623: carboxyvinyl-carboxyphosphonate phosphorylmutase( EC:2.7.8.23 ) |
*
Bordetella bronchiseptica RB50 Site: position = -182 score = 4.78915 sequence = ACTGTCAACAGT Site: position = -89 score = 4.55728 sequence = AGAGTTGACACT Gene: BB1341: carboxyvinyl-carboxyphosphonate phosphorylmutase( EC:2.7.8.23 ) |
|
carboxyvinyl-carboxyphosphonate phosphorylmutase( EC:2.7.8.23 ) |
| CRON 4. | ||||
| acnA |
*
Bordetella avium 197N Site: position = -32 score = 4.96893 sequence = AGTGTTGACACT Site: position = -261 score = 4.23472 sequence = AGTGTTAACAGC Site: position = -230 score = 4.55728 sequence = AGTGTCAACTCT Gene: BAV0625: Aconitate hydratase (EC 4.2.1.3) |
*
Bordetella bronchiseptica RB50 Site: position = -122 score = 4.55728 sequence = AGTGTCAACTCT Site: position = -29 score = 4.78915 sequence = ACTGTTGACAGT Gene: BB1342: Aconitate hydratase (EC 4.2.1.3) |
|
Aconitate hydratase (EC 4.2.1.3) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |