Regulog SPOA0336 - Rhodobacterales

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:
Biological process:	Sugar utilization
Effector:
Phylum:	Proteobacteria/Alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 6 sites [see more]

Member of regulog collections

By taxonomy - Rhodobacterales
By TF family - LacI
By pathway - Sugar utilization

Statistics of regulated genes
Genome	Genes	Operons
Hyphomonas neptunium ATCC 15444
Jannaschia sp. CCS1
Loktanella vestfoldensis SKA53
Oceanicaulis alexandrii HTCC2633
Oceanicola batsensis HTCC2597
Oceanicola granulosus HTCC2516
Paracoccus denitrificans PD1222
Rhodobacter sphaeroides 2.4.1
Rhodobacterales bacterium HTCC2654
Roseobacter sp. MED193
Roseovarius nubinhibens ISM
Roseovarius sp. 217
Silicibacter TM1040
Silicibacter pomeroyi DSS-3	6	2
Sulfitobacter sp. EE-36	6	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
SPOA0335	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516 Gene: OG2516_06394: TRAP dicarboxylate family transporter, DctP subunit	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040	* Silicibacter pomeroyi DSS-3 Site: position = -81 score = 6.0113 sequence = AAATGATTGCGCAACCATTA Site: position = -58 score = 6.08784 sequence = AAATGATTGCGCAACCATTT Gene: SPOA0335: TRAP dicarboxylate family transporter, DctP subunit	* Sulfitobacter sp. EE-36 Site: position = -74 score = 5.47481 sequence = AGATGACAGCGCTGTCATTA Gene: EE36_06248: TRAP dicarboxylate family transporter, DctP subunit	TRAP dicarboxylate family transporter, DctP subunit
SPOA0334	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516 Gene: OG2516_06389: TRAP dicarboxylate family transporter, DctQ subunit	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPOA0334: TRAP dicarboxylate family transporter, DctQ subunit	Sulfitobacter sp. EE-36 Gene: EE36_06253: TRAP dicarboxylate family transporter, DctQ subunit	TRAP dicarboxylate family transporter, DctQ subunit
SPOA0333	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516 Gene: OG2516_06384: TRAP dicarboxylate family transporter, DctM subunit	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPOA0333: TRAP dicarboxylate family transporter, DctM subunit	Sulfitobacter sp. EE-36 Gene: EE36_06258: TRAP dicarboxylate family transporter, DctM subunit	TRAP dicarboxylate family transporter, DctM subunit
COG0129	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPOA0332: L-arabinonate dehydratase	Sulfitobacter sp. EE-36 Gene: EE36_06263: L-arabinonate dehydratase	L-arabinonate dehydratase
kdgK	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040	Silicibacter pomeroyi DSS-3 Gene: SPOA0331: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)	Sulfitobacter sp. EE-36 Gene: EE36_06268: 2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)	2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45)

CRON 2.
SPOA0336	Hyphomonas neptunium ATCC 15444	Jannaschia sp. CCS1	Loktanella vestfoldensis SKA53	Oceanicaulis alexandrii HTCC2633	Oceanicola batsensis HTCC2597	Oceanicola granulosus HTCC2516	Paracoccus denitrificans PD1222	Rhodobacter sphaeroides 2.4.1	Rhodobacterales bacterium HTCC2654	Roseobacter sp. MED193	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Silicibacter TM1040	* Silicibacter pomeroyi DSS-3 Site: position = -64 score = 6.0113 sequence = TAATGGTTGCGCAATCATTT Site: position = -87 score = 6.08784 sequence = AAATGGTTGCGCAATCATTT Gene: SPOA0336: Transcriptional regulator, LacI family	* Sulfitobacter sp. EE-36 Site: position = -64 score = 5.47481 sequence = TAATGACAGCGCTGTCATCT Gene: EE36_06243: Transcriptional regulator, LacI family	Transcriptional regulator, LacI family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog SPOA0336 - Rhodobacterales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --