Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog LldR - Nocardiaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Lactate utilization
Effector: L-lactate
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 10 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Nocardia farcinica IFM 10152
Rhodococcus erythropolis PR4 4 2
Rhodococcus opacus B4 4 2
Rhodococcus sp. RHA1 2 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
lldR
 
Nocardia farcinica IFM 10152
*
Rhodococcus erythropolis PR4

Site:
position = -76
score = 6.19742
sequence = TGTGGTCTGACCACA

Gene: RER_52690: Lactate-responsive regulator LldR in Actinobacteria, GntR family
*
Rhodococcus opacus B4

Site:
position = -56
score = 6.19742
sequence = TGTGGTCTGACCACA

Site:
position = -32
score = 6.19742
sequence = TGTGGTCAGACCACA

Gene: ROP_32710: Lactate-responsive regulator LldR in Actinobacteria, GntR family
*
Rhodococcus sp. RHA1

Site:
position = -56
score = 6.19742
sequence = TGTGGTCTGACCACA

Site:
position = -32
score = 6.19742
sequence = TGTGGTCAGACCACA

Gene: RHA1_ro03478: Lactate-responsive regulator LldR in Actinobacteria, GntR family
Lactate-responsive regulator LldR in Actinobacteria, GntR family
 
CRON 2.
lldE
 
Nocardia farcinica IFM 10152
*
Rhodococcus erythropolis PR4

Site:
position = -37
score = 6.19742
sequence = TGTGGTCAGACCACA

Gene: RER_52680: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE
*
Rhodococcus opacus B4

Site:
position = -62
score = 6.19742
sequence = TGTGGTCTGACCACA

Site:
position = -38
score = 6.19742
sequence = TGTGGTCAGACCACA

Gene: ROP_32720: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE
*
Rhodococcus sp. RHA1

Site:
position = 25
score = 6.19742
sequence = TGTGGTCTGACCACA

Site:
position = 49
score = 6.19742
sequence = TGTGGTCAGACCACA

Gene: RHA1_ro03479: L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE
L-lactate dehydrogenase, Fe-S oxidoreductase subunit LldE
lldF
 
Nocardia farcinica IFM 10152
 
Rhodococcus erythropolis PR4

Gene: RER_52670: L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF
 
Rhodococcus opacus B4

Gene: ROP_32730: L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF
 
Rhodococcus sp. RHA1

Gene: RHA1_ro03480: L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF
L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit LldF
lldG
 
Nocardia farcinica IFM 10152

Gene: nfa23580: L-lactate dehydrogenase, subunit LldG
 
Rhodococcus erythropolis PR4

Gene: RER_52660: L-lactate dehydrogenase, subunit LldG
 
Rhodococcus opacus B4

Gene: ROP_32740: L-lactate dehydrogenase, subunit LldG
 
Rhodococcus sp. RHA1

Gene: RHA1_ro03481: L-lactate dehydrogenase, subunit LldG
L-lactate dehydrogenase, subunit LldG
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise