Regulog ROP_32700 - Nocardiaceae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/Others |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Nocardiaceae
- By TF family - GntR/Others
| Genome | Genes | Operons |
|---|---|---|
| Nocardia farcinica IFM 10152 | ||
| Rhodococcus erythropolis PR4 | ||
| Rhodococcus opacus B4 | 6 | 2 |
| Rhodococcus sp. RHA1 | 6 | 2 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| ROP_32700 |
|
|
*
Rhodococcus opacus B4 Site: position = -79 score = 3.56017 sequence = GATCGTTTAACATGG Site: position = -111 score = 5.46613 sequence = AATCGTTCAACGATC Gene: ROP_32700: Transcriptional regulator, GntR family |
*
Rhodococcus sp. RHA1 Site: position = -79 score = 3.56017 sequence = GATCGTTTAACATGG Site: position = -111 score = 5.46613 sequence = AATCGTTCAACGATC Gene: RHA1_ro03477: Transcriptional regulator, GntR family |
Transcriptional regulator, GntR family |
| CRON 2. | |||||
| COG2814 |
|
|
*
Rhodococcus opacus B4 Site: position = -58 score = 5.46613 sequence = GATCGTTGAACGATT Site: position = -90 score = 3.56017 sequence = CCATGTTAAACGATC Gene: ROP_32690: Major facilitator superfamily transporter |
*
Rhodococcus sp. RHA1 Site: position = -111 score = 3.56017 sequence = CCATGTTAAACGATC Site: position = -79 score = 5.46613 sequence = GATCGTTGAACGATT Gene: RHA1_ro03476: Major facilitator superfamily transporter |
Major facilitator superfamily transporter |
| COG4336 |
|
|
Gene: ROP_32680: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase |
Gene: RHA1_ro03475: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase |
hypothetical protein possibly connected to lactam utilization and allophanate hydrolase |
| COG1540 |
Gene: nfa56540: Uncharacterized proteins, homologs of lactam utilization protein B |
Gene: RER_07000: Uncharacterized proteins, homologs of lactam utilization protein B |
Gene: ROP_32670: Uncharacterized proteins, homologs of lactam utilization protein B |
Gene: RHA1_ro03474: Uncharacterized proteins, homologs of lactam utilization protein B |
Uncharacterized proteins, homologs of lactam utilization protein B |
| alhA |
Gene: nfa56530: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54) |
Gene: RER_06990: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54) |
Gene: ROP_32660: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54) |
Gene: RHA1_ro03473: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54) |
Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54) |
| alhB |
Gene: nfa56520: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54) |
Gene: RER_06980: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54) |
Gene: ROP_32650: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54) |
Gene: RHA1_ro03472: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54) |
Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |