Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog ROP_32700 - Nocardiaceae

Properties
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process:
Effector:
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 8 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Nocardia farcinica IFM 10152
Rhodococcus erythropolis PR4
Rhodococcus opacus B4 6 2
Rhodococcus sp. RHA1 6 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ROP_32700
 
Nocardia farcinica IFM 10152
 
Rhodococcus erythropolis PR4
*
Rhodococcus opacus B4

Site:
position = -79
score = 3.56017
sequence = GATCGTTTAACATGG

Site:
position = -111
score = 5.46613
sequence = AATCGTTCAACGATC

Gene: ROP_32700: Transcriptional regulator, GntR family
*
Rhodococcus sp. RHA1

Site:
position = -79
score = 3.56017
sequence = GATCGTTTAACATGG

Site:
position = -111
score = 5.46613
sequence = AATCGTTCAACGATC

Gene: RHA1_ro03477: Transcriptional regulator, GntR family
Transcriptional regulator, GntR family
 
CRON 2.
COG2814
 
Nocardia farcinica IFM 10152
 
Rhodococcus erythropolis PR4
*
Rhodococcus opacus B4

Site:
position = -58
score = 5.46613
sequence = GATCGTTGAACGATT

Site:
position = -90
score = 3.56017
sequence = CCATGTTAAACGATC

Gene: ROP_32690: Major facilitator superfamily transporter
*
Rhodococcus sp. RHA1

Site:
position = -111
score = 3.56017
sequence = CCATGTTAAACGATC

Site:
position = -79
score = 5.46613
sequence = GATCGTTGAACGATT

Gene: RHA1_ro03476: Major facilitator superfamily transporter
Major facilitator superfamily transporter
COG4336
 
Nocardia farcinica IFM 10152
 
Rhodococcus erythropolis PR4
 
Rhodococcus opacus B4

Gene: ROP_32680: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase
 
Rhodococcus sp. RHA1

Gene: RHA1_ro03475: hypothetical protein possibly connected to lactam utilization and allophanate hydrolase
hypothetical protein possibly connected to lactam utilization and allophanate hydrolase
COG1540
 
Nocardia farcinica IFM 10152

Gene: nfa56540: Uncharacterized proteins, homologs of lactam utilization protein B
 
Rhodococcus erythropolis PR4

Gene: RER_07000: Uncharacterized proteins, homologs of lactam utilization protein B
 
Rhodococcus opacus B4

Gene: ROP_32670: Uncharacterized proteins, homologs of lactam utilization protein B
 
Rhodococcus sp. RHA1

Gene: RHA1_ro03474: Uncharacterized proteins, homologs of lactam utilization protein B
Uncharacterized proteins, homologs of lactam utilization protein B
alhA
 
Nocardia farcinica IFM 10152

Gene: nfa56530: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)
 
Rhodococcus erythropolis PR4

Gene: RER_06990: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)
 
Rhodococcus opacus B4

Gene: ROP_32660: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)
 
Rhodococcus sp. RHA1

Gene: RHA1_ro03473: Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)
Putative allophanate hydrolase 2, subunit 1 (EC 3.5.1.54)
alhB
 
Nocardia farcinica IFM 10152

Gene: nfa56520: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54)
 
Rhodococcus erythropolis PR4

Gene: RER_06980: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54)
 
Rhodococcus opacus B4

Gene: ROP_32650: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54)
 
Rhodococcus sp. RHA1

Gene: RHA1_ro03472: Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54)
Putative allophanate hydrolase 2, subunit 2 (EC 3.5.1.54)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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