Regulog SAH_riboswitch - Various betaproteobacteria
| Regulator type: | RNA regulatory element |
| Name: | SAH_riboswitch |
| RFAM: | RF01057 |
| Regulation mode: | |
| Biological process: | Methionine metabolism |
| Effector: | S-adenosylhomocysteine |
| Phylum: | Proteobacteria/Beta |
Member of regulog collections
- By taxonomy - Various betaproteobacteria
- By RNA motif - SAH_riboswitch
- By effector - S-adenosylhomocysteine
- By pathway - Methionine metabolism
| Genome | Genes | Operons |
|---|---|---|
| Azoarcus sp. EbN1 | 3 | 2 |
| Dechloromonas aromatica RCB | 5 | 2 |
| Thauera sp. MZ1T | 4 | 2 |
| Chromobacterium violaceum ATCC 12472 | 2 | 1 |
| Laribacter hongkongensis HLHK9 | 1 | 1 |
| Neisseria meningitidis MC58 | ||
| Methylobacillus flagellatus KT | 3 | 1 |
| Methylophilales bacterium HTCC2181 | 2 | 1 |
| Methylotenera mobilis JLW8 | 3 | 1 |
| Nitrosomonas europaea ATCC 19718 | 2 | 1 |
| Nitrosospira multiformis ATCC 25196 | 2 | 1 |
| Thiobacillus denitrificans | 3 | 1 |
| Genes | Function | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||||||
| ahcY |
*
Azoarcus sp. EbN1 Site: position = -139 score = 47.98 sequence = CTGCCGAGGAGCGCT... Gene: ebA1874: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Dechloromonas aromatica RCB Site: position = -144 score = 45.68 sequence = ACCTACCGAGGGGCG... Gene: Daro_0186: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Thauera sp. MZ1T Site: position = -142 score = 17.24 sequence = CGCCCTGCGGCGGGT... Gene: Tmz1t_3842: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Chromobacterium violaceum ATCC 12472 Site: position = -160 score = 29.14 sequence = CCGAGGAGCGCTGCG... Gene: CV0965: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Laribacter hongkongensis HLHK9 Site: position = -134 score = 54.2 sequence = GCCGAGGGGCGCTGC... Gene: LHK_00674: Adenosylhomocysteinase (EC 3.3.1.1) |
|
*
Methylobacillus flagellatus KT Site: position = -197 score = 44.64 sequence = CTCTACCGAGGAACG... Gene: Mfla_0193: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Methylophilales bacterium HTCC2181 Site: position = -138 score = 30.69 sequence = TATTACCGAGGAACG... Gene: MB2181_00490: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Methylotenera mobilis JLW8 Site: position = -169 score = 39.78 sequence = TACTTCTGAGGGGCG... Gene: Mmol_2191: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Nitrosomonas europaea ATCC 19718 Site: position = -93 score = 46.21 sequence = GGTACCGAGGAGCGC... Gene: NE0660: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Nitrosospira multiformis ATCC 25196 Site: position = -95 score = 59.29 sequence = CCAGACCGAGGAGCG... Gene: Nmul_A2540: Adenosylhomocysteinase (EC 3.3.1.1) |
*
Thiobacillus denitrificans Site: position = 9 score = 58.48 sequence = CGGTTCCGAGGAGCG... Gene: Tbd_2519: Adenosylhomocysteinase (EC 3.3.1.1) |
Adenosylhomocysteinase (EC 3.3.1.1) |
| PF04020 |
|
Gene: Daro_0185: Predicted membrane protein |
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Gene: Mfla_0192: Predicted membrane protein |
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Gene: Mmol_2190: Predicted membrane protein |
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Gene: Tbd_2518: Predicted membrane protein |
Predicted membrane protein |
| COG1189 |
|
Gene: Daro_0184: S-adenosyl-L-methionine-dependent RNA binding methyltransferase |
Gene: Tmz1t_3843: S-adenosyl-L-methionine-dependent RNA binding methyltransferase |
Gene: CV4301: S-adenosyl-L-methionine-dependent RNA binding methyltransferase |
Gene: LHK_03150: S-adenosyl-L-methionine-dependent RNA binding methyltransferase |
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S-adenosyl-L-methionine-dependent RNA binding methyltransferase |
| metF |
Gene: ebA1875: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Daro_0183: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Tmz1t_3844: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: CV0966: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: LHK_00541: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: NMB0943: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Mfla_0191: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: MB2181_00485: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Mmol_2189: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: NE0661: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Nmul_A2539: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
Gene: Tbd_2517: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) |
| CRON 2. | |||||||||||||
| metH |
*
Azoarcus sp. EbN1 Site: position = -169 score = 48.11 sequence = TTGCTGAGGAGCGCT... Gene: ebA3184: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
*
Dechloromonas aromatica RCB Site: position = -152 score = 60.07 sequence = TTCTGCCGAGGAGCG... Gene: Daro_0046: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
*
Thauera sp. MZ1T Site: position = -149 score = 53.85 sequence = CTGCCGAGGAGCGCT... Gene: Tmz1t_0606: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
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Gene: Tbd_0234: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |