Regulog PdxR2 - Micrococcineae
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Pyridoxine biosynthesis |
| Effector: | Pyridoxal-5-phosphate |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Micrococcineae
- By trascription factor - PdxR
- By TF family - GntR/MocR
- By effector - Pyridoxal-5-phosphate
- By pathway - Pyridoxine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Arthrobacter aurescens TC1 | ||
| Arthrobacter chlorophenolicus A6 | ||
| Arthrobacter sp. FB24 | ||
| Beutenbergia cavernae DSM 12333 | ||
| Brachybacterium faecium DSM 4810 | 2 | 2 |
| Brevibacterium linens BL2 | ||
| Clavibacter michiganensis subsp. michiganensis NCPPB 382 | ||
| Janibacter sp. HTCC2649 | ||
| Jonesia denitrificans DSM 20603 | ||
| Kocuria rhizophila DC2201 | ||
| Kytococcus sedentarius DSM 20547 | ||
| Leifsonia xyli subsp. xyli str. CTCB07 | 4 | 2 |
| Renibacterium salmoninarum ATCC 33209 | ||
| Tropheryma whipplei str. Twist |
| Genes | Function | ||||||||||||||
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| CRON 1. | |||||||||||||||
| pdxR2 |
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Brachybacterium faecium DSM 4810 Site: position = -114 score = 4.10093 sequence = ATTGATCTGTGCCAAA Gene: Bfae_00360: Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family |
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Leifsonia xyli subsp. xyli str. CTCB07 Site: position = -39 score = 5.49289 sequence = TTTGGCCTATGCCAAA Gene: Lxx10730: Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family |
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Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family |
| pdxK |
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Gene: JNB_20478: Pyridoxal kinase (EC 2.7.1.35) |
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Gene: Lxx10710: Pyridoxal kinase (EC 2.7.1.35) |
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Pyridoxal kinase (EC 2.7.1.35) |
| CRON 2. | |||||||||||||||
| pdxS |
Gene: AAur_0487: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
2
Arthrobacter chlorophenolicus A6 Gene: Achl_2776: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) Gene: Achl_2040: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
2
Arthrobacter sp. FB24 Gene: Arth_2314: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) Gene: Arth_1760: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
Gene: Bcav_1986: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
*
Brachybacterium faecium DSM 4810 Site: position = -84 score = 4.10093 sequence = TTTGGCACAGATCAAT Gene: Bfae_00350: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
Gene: BlinB01003388: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
Gene: CMM_1819: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
Gene: JNB_02405: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
Gene: Jden_1600: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
Gene: KRH_01130: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
Gene: Ksed_15370: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
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Leifsonia xyli subsp. xyli str. CTCB07 Site: position = -46 score = 5.49289 sequence = TTTGGCATAGGCCAAA Gene: Lxx10720: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
Gene: RSal33209_2009: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
Gene: TW264: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) |
| pdxT |
Gene: AAur_2301: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
2
Arthrobacter chlorophenolicus A6 Gene: Achl_2035: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) Gene: Achl_3253: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Gene: Arth_2305: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Gene: Bcav_1988: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
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Gene: BlinB01003389: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Gene: CMM_1818: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Gene: JNB_02435: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Gene: Jden_1601: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Gene: KRH_01120: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Gene: Ksed_15360: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Gene: Lxx10740: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Gene: RSal33209_2003: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Gene: TW265: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |