Regulog PdxR2 - Micrococcineae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/MocR
Regulation mode:
Biological process:	Pyridoxine biosynthesis
Effector:	Pyridoxal-5-phosphate
Phylum:	Actinobacteria
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 4 sites [see more]

Member of regulog collections

By taxonomy - Micrococcineae
By trascription factor - PdxR
By TF family - GntR/MocR
By effector - Pyridoxal-5-phosphate
By pathway - Pyridoxine biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Arthrobacter aurescens TC1
Arthrobacter chlorophenolicus A6
Arthrobacter sp. FB24
Beutenbergia cavernae DSM 12333
Brachybacterium faecium DSM 4810	2	2
Brevibacterium linens BL2
Clavibacter michiganensis subsp. michiganensis NCPPB 382
Janibacter sp. HTCC2649
Jonesia denitrificans DSM 20603
Kocuria rhizophila DC2201
Kytococcus sedentarius DSM 20547
Leifsonia xyli subsp. xyli str. CTCB07	4	2
Renibacterium salmoninarum ATCC 33209
Tropheryma whipplei str. Twist

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes															Function

CRON 1.
pdxR2	Arthrobacter aurescens TC1	Arthrobacter chlorophenolicus A6	Arthrobacter sp. FB24	Beutenbergia cavernae DSM 12333	* Brachybacterium faecium DSM 4810 Site: position = -114 score = 4.10093 sequence = ATTGATCTGTGCCAAA Gene: Bfae_00360: Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	* Leifsonia xyli subsp. xyli str. CTCB07 Site: position = -39 score = 5.49289 sequence = TTTGGCCTATGCCAAA Gene: Lxx10730: Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family
pdxK	Arthrobacter aurescens TC1	Arthrobacter chlorophenolicus A6	Arthrobacter sp. FB24	Beutenbergia cavernae DSM 12333	Brachybacterium faecium DSM 4810	Brevibacterium linens BL2	Clavibacter michiganensis subsp. michiganensis NCPPB 382	Janibacter sp. HTCC2649 Gene: JNB_20478: Pyridoxal kinase (EC 2.7.1.35)	Jonesia denitrificans DSM 20603	Kocuria rhizophila DC2201	Kytococcus sedentarius DSM 20547	Leifsonia xyli subsp. xyli str. CTCB07 Gene: Lxx10710: Pyridoxal kinase (EC 2.7.1.35)	Renibacterium salmoninarum ATCC 33209	Tropheryma whipplei str. Twist	Pyridoxal kinase (EC 2.7.1.35)

CRON 2.
pdxS	Arthrobacter aurescens TC1 Gene: AAur_0487: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	2 Arthrobacter chlorophenolicus A6 Gene: Achl_2776: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) Gene: Achl_2040: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	2 Arthrobacter sp. FB24 Gene: Arth_2314: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-) Gene: Arth_1760: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Beutenbergia cavernae DSM 12333 Gene: Bcav_1986: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	* Brachybacterium faecium DSM 4810 Site: position = -84 score = 4.10093 sequence = TTTGGCACAGATCAAT Gene: Bfae_00350: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Brevibacterium linens BL2 Gene: BlinB01003388: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Clavibacter michiganensis subsp. michiganensis NCPPB 382 Gene: CMM_1819: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Janibacter sp. HTCC2649 Gene: JNB_02405: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Jonesia denitrificans DSM 20603 Gene: Jden_1600: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Kocuria rhizophila DC2201 Gene: KRH_01130: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Kytococcus sedentarius DSM 20547 Gene: Ksed_15370: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	* Leifsonia xyli subsp. xyli str. CTCB07 Site: position = -46 score = 5.49289 sequence = TTTGGCATAGGCCAAA Gene: Lxx10720: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Renibacterium salmoninarum ATCC 33209 Gene: RSal33209_2009: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Tropheryma whipplei str. Twist Gene: TW264: Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)	Pyridoxine biosynthesis glutamine amidotransferase, synthase subunit (EC 2.4.2.-)
pdxT	Arthrobacter aurescens TC1 Gene: AAur_2301: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	2 Arthrobacter chlorophenolicus A6 Gene: Achl_2035: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-) Gene: Achl_3253: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Arthrobacter sp. FB24 Gene: Arth_2305: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Beutenbergia cavernae DSM 12333 Gene: Bcav_1988: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Brachybacterium faecium DSM 4810	Brevibacterium linens BL2 Gene: BlinB01003389: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Clavibacter michiganensis subsp. michiganensis NCPPB 382 Gene: CMM_1818: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Janibacter sp. HTCC2649 Gene: JNB_02435: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Jonesia denitrificans DSM 20603 Gene: Jden_1601: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Kocuria rhizophila DC2201 Gene: KRH_01120: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Kytococcus sedentarius DSM 20547 Gene: Ksed_15360: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Leifsonia xyli subsp. xyli str. CTCB07 Gene: Lxx10740: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Renibacterium salmoninarum ATCC 33209 Gene: RSal33209_2003: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Tropheryma whipplei str. Twist Gene: TW265: Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)	Pyridoxine biosynthesis glutamine amidotransferase, glutaminase subunit (EC 2.4.2.-)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PdxR2 - Micrococcineae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --