Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog MsmR - Micrococcineae

Properties
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Sugar utilization
Effector:
Phylum: Actinobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 8 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Arthrobacter aurescens TC1 6 2
Arthrobacter chlorophenolicus A6
Arthrobacter sp. FB24 6 2
Beutenbergia cavernae DSM 12333
Brachybacterium faecium DSM 4810 3 1
Brevibacterium linens BL2
Clavibacter michiganensis subsp. michiganensis NCPPB 382
Janibacter sp. HTCC2649
Jonesia denitrificans DSM 20603
Kocuria rhizophila DC2201
Kytococcus sedentarius DSM 20547
Leifsonia xyli subsp. xyli str. CTCB07
Renibacterium salmoninarum ATCC 33209
Tropheryma whipplei str. Twist
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
msmE
*
Arthrobacter aurescens TC1

Site:
position = -59
score = 6.4015
sequence = TCATCGATACGCATCGTCGA

Site:
position = -46
score = 6.54515
sequence = TCGTCGATACGCATCGATAA

Gene: AAur_3251: Multiple sugar ABC transporter, substrate-binding protein
 
Arthrobacter chlorophenolicus A6
*
Arthrobacter sp. FB24

Site:
position = -48
score = 6.54515
sequence = TTGTCGATACGCATCGATGA

Gene: Arth_3465: Multiple sugar ABC transporter, substrate-binding protein
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810
 
Brevibacterium linens BL2
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
Multiple sugar ABC transporter, substrate-binding protein
msmF
 
Arthrobacter aurescens TC1

Gene: AAur_3252: Multiple sugar ABC transporter, permease protein 1
 
Arthrobacter chlorophenolicus A6
 
Arthrobacter sp. FB24

Gene: Arth_3466: Multiple sugar ABC transporter, permease protein 1
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810
 
Brevibacterium linens BL2
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
Multiple sugar ABC transporter, permease protein 1
msmG
 
Arthrobacter aurescens TC1

Gene: AAur_3253: Multiple sugar ABC transporter, permease protein 2
 
Arthrobacter chlorophenolicus A6
 
Arthrobacter sp. FB24

Gene: Arth_3467: Multiple sugar ABC transporter, permease protein 2
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810
 
Brevibacterium linens BL2
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
Multiple sugar ABC transporter, permease protein 2
thuA
 
Arthrobacter aurescens TC1

Gene: AAur_3254: Trehalose utilization protein
 
Arthrobacter chlorophenolicus A6
 
Arthrobacter sp. FB24

Gene: Arth_3468: Trehalose utilization protein
 
Beutenbergia cavernae DSM 12333

Gene: Bcav_1145: Trehalose utilization protein
*
Brachybacterium faecium DSM 4810

Site:
position = -47
score = 5.6433
sequence = GCATCGATTCGAATCGATGC

Gene: Bfae_17810: Trehalose utilization protein
 
Brevibacterium linens BL2
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382

Gene: CMM_0273: Trehalose utilization protein
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
Trehalose utilization protein
AAur_3255
 
Arthrobacter aurescens TC1

Gene: AAur_3255: putative dehydrogenase
 
Arthrobacter chlorophenolicus A6
 
Arthrobacter sp. FB24

Gene: Arth_3469: putative dehydrogenase
 
Beutenbergia cavernae DSM 12333

Gene: Bcav_1146: putative dehydrogenase
 
Brachybacterium faecium DSM 4810

Gene: Bfae_17800: putative dehydrogenase
 
Brevibacterium linens BL2
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382

Gene: CMM_0274: putative dehydrogenase
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
putative dehydrogenase
msmR
*
Arthrobacter aurescens TC1

Site:
position = -75
score = 6.43315
sequence = TTCTCGATGCGCATCGACGA

Site:
position = -62
score = 6.36638
sequence = TCGACGATACGCATCGACAA

Gene: AAur_3250: Multiple sugar utilization transcriptional regulator MsmR, LacI family
 
Arthrobacter chlorophenolicus A6
*
Arthrobacter sp. FB24

Site:
position = -117
score = 6.3887
sequence = TTCTCGATACGCATCGACGA

Site:
position = -104
score = 6.32192
sequence = TCGACGATACGCATCGATAA

Gene: Arth_3464: Multiple sugar utilization transcriptional regulator MsmR, LacI family
 
Beutenbergia cavernae DSM 12333
 
Brachybacterium faecium DSM 4810

Gene: Bfae_17790: Multiple sugar utilization transcriptional regulator MsmR, LacI family
 
Brevibacterium linens BL2
 
Clavibacter michiganensis subsp. michiganensis NCPPB 382
 
Janibacter sp. HTCC2649
 
Jonesia denitrificans DSM 20603
 
Kocuria rhizophila DC2201
 
Kytococcus sedentarius DSM 20547
 
Leifsonia xyli subsp. xyli str. CTCB07
 
Renibacterium salmoninarum ATCC 33209
 
Tropheryma whipplei str. Twist
Multiple sugar utilization transcriptional regulator MsmR, LacI family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD