Regulog Sde_0506 - Alteromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	LacI
Regulation mode:	repressor
Biological process:	Sugar utilization
Effector:
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 6 sites [see more]

Member of regulog collections

By taxonomy - Alteromonadales
By TF family - LacI
By pathway - Sugar utilization

Statistics of regulated genes
Genome	Genes	Operons
Alteromonadales bacterium TW-7
Alteromonas macleodii 'Deep ecotype'	4	2
Colwellia psychrerythraea 34H
Glaciecola sp. HTCC2999
Idiomarina baltica OS145
Idiomarina loihiensis L2TR
Pseudoalteromonas atlantica T6c	4	2
Pseudoalteromonas haloplanktis TAC125
Pseudoalteromonas tunicata D2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes										Function

CRON 1.
COG0673	Alteromonadales bacterium TW-7	* Alteromonas macleodii 'Deep ecotype' Site: position = -89 score = 6.86953 sequence = AAATGTAACGGGTTACATTT Gene: MADE_00430: Predicted dehydrogenases and related proteins	Colwellia psychrerythraea 34H	Glaciecola sp. HTCC2999 Gene: GHTCC_010100004468: Predicted dehydrogenases and related proteins	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	* Pseudoalteromonas atlantica T6c Site: position = -243 score = 6.43388 sequence = AAATGTAACCGTTAGCATTT Site: position = -82 score = 6.73842 sequence = AAATGAAACCCGTTACATTT Gene: Patl_2690: Predicted dehydrogenases and related proteins	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Predicted dehydrogenases and related proteins
COG1082	Alteromonadales bacterium TW-7	Alteromonas macleodii 'Deep ecotype' Gene: MADE_00431: Predicted sugar isomerase	Colwellia psychrerythraea 34H	Glaciecola sp. HTCC2999 Gene: GHTCC_010100004473: Predicted sugar isomerase	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Pseudoalteromonas atlantica T6c Gene: Patl_2689: Predicted sugar isomerase	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Predicted sugar isomerase

CRON 2.
Sde_0506	Alteromonadales bacterium TW-7	* Alteromonas macleodii 'Deep ecotype' Site: position = -122 score = 6.3886 sequence = AAATGAAAACGGTTACATAT Gene: MADE_00429: Transcriptional regulator for sugar utilization, LacI family protein	Colwellia psychrerythraea 34H	Glaciecola sp. HTCC2999	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	* Pseudoalteromonas atlantica T6c Site: position = -233 score = 6.73842 sequence = AAATGTAACGGGTTTCATTT Site: position = -72 score = 6.43388 sequence = AAATGCTAACGGTTACATTT Gene: Patl_2691: Transcriptional regulator for sugar utilization, LacI family protein	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Transcriptional regulator for sugar utilization, LacI family protein
COG1082	Alteromonadales bacterium TW-7	Alteromonas macleodii 'Deep ecotype' Gene: MADE_00428: Sugar phosphate isomerases/epimerases	Colwellia psychrerythraea 34H	Glaciecola sp. HTCC2999	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Pseudoalteromonas atlantica T6c Gene: Patl_2692: Sugar phosphate isomerases/epimerases	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Sugar phosphate isomerases/epimerases

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Sde_0506 - Alteromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --