Regulog PdxR2 - Xanthomonadales
| Regulator type: | Transcription factor |
| Regulator family: | GntR/MocR |
| Regulation mode: | |
| Biological process: | Pyridoxine/pyridoxal homeostasis |
| Effector: | Pyridoxal-5-phosphate |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Xanthomonadales
- By trascription factor - PdxR
- By TF family - GntR/MocR
- By effector - Pyridoxal-5-phosphate
- By pathway - Pyridoxine/pyridoxal homeostasis
| Genome | Genes | Operons |
|---|---|---|
| Stenotrophomonas maltophilia K279a | 3 | 2 |
| Xanthomonas axonopodis pv. citri str. 306 | ||
| Xanthomonas campestris pv. campestris str. ATCC 33913 | ||
| Xylella fastidiosa 9a5c |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| pdxR2 |
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Stenotrophomonas maltophilia K279a Site: position = -16 score = 5.73391 sequence = TTTGGCATAGGACAAA Gene: Smlt2930: Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family |
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Predicted transcriptional regulator of pyridoxine metabolism, GntR/MocR family |
| CRON 2. | |||||
| COG0325 |
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Stenotrophomonas maltophilia K279a Site: position = -76 score = 5.73391 sequence = TTTGTCCTATGCCAAA Gene: Smlt2931: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type |
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Gene: XF1717: Predicted pyridoxal phosphate-dependent enzyme, YBL036C type |
Predicted pyridoxal phosphate-dependent enzyme, YBL036C type |
| COG0518 |
Gene: Smlt2932: Putative glutamine amidotransferase-like protein |
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Putative glutamine amidotransferase-like protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |