Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog SMb20717 - Rhizobiales

Properties
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Sugar utilization
Effector:
Phylum: Proteobacteria/Alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 16 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Agrobacterium tumefaciens str. C58 (Cereon)
Azorhizobium caulinodans ORS 571
Bartonella quintana str. Toulouse
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1
Brucella melitensis 16M
Mesorhizobium loti MAFF303099
Mesorhizobium sp. BNC1
Nitrobacter winogradskyi Nb-255
Rhizobium etli CFN 42 4 2
Rhizobium leguminosarum bv. viciae 3841 4 2
Rhizobium sp. NGR234 4 2
Rhodopseudomonas palustris CGA009
Sinorhizobium meliloti 1021 4 2
Xanthobacter autotrophicus Py2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
SMb20718
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu3200: Sugar ABC transporter, ATP-binding protein
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M

Gene: BMEI1392: Sugar ABC transporter, ATP-binding protein
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
*
Rhizobium etli CFN 42

Site:
position = -158
score = 6.06827
sequence = CGATGTAAAGGTTTACATGA

Site:
position = -179
score = 6.09095
sequence = CGATGTAAACCTTTACATGC

Gene: RHE_CH03646: Sugar ABC transporter, ATP-binding protein
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -80
score = 5.82248
sequence = CGATGTAAACCTTTACACGA

Site:
position = -59
score = 6.24112
sequence = GTATGTAAAGGTTTACATAG

Gene: RL4174: Sugar ABC transporter, ATP-binding protein
*
Rhizobium sp. NGR234

Site:
position = -53
score = 5.57317
sequence = TAGTGTAAAGGTTTACATCA

Site:
position = -75
score = 5.68897
sequence = TGATGTAAACCTTTACAGTG

Gene: NGR_b14990: Sugar ABC transporter, ATP-binding protein
 
Rhodopseudomonas palustris CGA009
*
Sinorhizobium meliloti 1021

Site:
position = -78
score = 6.20256
sequence = TTATGTAAACCTTTACATCG

Site:
position = -57
score = 5.47744
sequence = GAGTGTAAAGGTTTACATGA

Gene: SMb20718: Sugar ABC transporter, ATP-binding protein
 
Xanthobacter autotrophicus Py2
Sugar ABC transporter, ATP-binding protein
SMb20719
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu3199: Sugar ABC transporter, inner membrane protein
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M

Gene: BMEI1391: Sugar ABC transporter, inner membrane protein
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42

Gene: RHE_CH03645: Sugar ABC transporter, inner membrane protein
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL4173: Sugar ABC transporter, inner membrane protein
 
Rhizobium sp. NGR234

Gene: NGR_b15000: Sugar ABC transporter, inner membrane protein
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021

Gene: SMb20719: Sugar ABC transporter, inner membrane protein
 
Xanthobacter autotrophicus Py2
Sugar ABC transporter, inner membrane protein
SMb20720
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu3198: Sugar ABC transporter, substrate-binding protein
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M

Gene: BMEI1390: Sugar ABC transporter, substrate-binding protein
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
 
Rhizobium etli CFN 42

Gene: RHE_CH03644: Sugar ABC transporter, substrate-binding protein
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL4172: Sugar ABC transporter, substrate-binding protein
 
Rhizobium sp. NGR234

Gene: NGR_b15010: Sugar ABC transporter, substrate-binding protein
 
Rhodopseudomonas palustris CGA009
 
Sinorhizobium meliloti 1021

Gene: SMb20720: Sugar ABC transporter, substrate-binding protein
 
Xanthobacter autotrophicus Py2
Sugar ABC transporter, substrate-binding protein
 
CRON 2.
SMb20717
 
Agrobacterium tumefaciens str. C58 (Cereon)
 
Azorhizobium caulinodans ORS 571
 
Bartonella quintana str. Toulouse
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Brucella melitensis 16M
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Nitrobacter winogradskyi Nb-255
*
Rhizobium etli CFN 42

Site:
position = -131
score = 6.06827
sequence = TCATGTAAACCTTTACATCG

Site:
position = -110
score = 6.09095
sequence = GCATGTAAAGGTTTACATCG

Gene: RHE_CH03647: Transcriptional regulator, LacI family
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -130
score = 6.24112
sequence = CTATGTAAACCTTTACATAC

Site:
position = -109
score = 5.82248
sequence = TCGTGTAAAGGTTTACATCG

Gene: RL4175: Transcriptional regulator, LacI family
*
Rhizobium sp. NGR234

Site:
position = -131
score = 5.57317
sequence = TGATGTAAACCTTTACACTA

Site:
position = -109
score = 5.68897
sequence = CACTGTAAAGGTTTACATCA

Gene: NGR_b14980: Transcriptional regulator, LacI family
 
Rhodopseudomonas palustris CGA009
*
Sinorhizobium meliloti 1021

Site:
position = -208
score = 6.20256
sequence = CGATGTAAAGGTTTACATAA

Site:
position = -229
score = 5.47744
sequence = TCATGTAAACCTTTACACTC

Gene: SMb20717: Transcriptional regulator, LacI family
 
Xanthobacter autotrophicus Py2
Transcriptional regulator, LacI family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD