Regulog CadR-PbrR - Alteromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	MerR
Regulation mode:	activator
Biological process:	Lead resistance; Cadmium resistance
Effector:	Lead ion, (Pb2+); Cadmium, ion (Cd2+)
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 9 sites [see more]

Member of regulog collections

By taxonomy - Alteromonadales
By trascription factor - CadR-PbrR
By TF family - MerR
By effector - Lead ion, (Pb2+)
By effector - Cadmium, ion (Cd2+)
By pathway - Lead resistance
By pathway - Cadmium resistance

Statistics of regulated genes
Genome	Genes	Operons
Pseudoalteromonas atlantica T6c	7	1
Alteromonas macleodii 'Deep ecotype'
Glaciecola sp. HTCC2999	6	1
Colwellia psychrerythraea 34H
Alteromonadales bacterium TW-7
Pseudoalteromonas haloplanktis TAC125	4	1
Pseudoalteromonas tunicata D2
Idiomarina baltica OS145	10	3
Idiomarina loihiensis L2TR	6	3

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes										Function

CRON 1.
czcD2	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	* Idiomarina baltica OS145 Site: position = -61 score = 5.49582 sequence = ACCTTATAGTAGCTTTATAGT Gene: OS145_03978: Co/Zn/Cd efflux protein	2 Idiomarina loihiensis L2TR* Site: position = -61 score = 5.49582 sequence = ACCTTATAGTAGCTTTATAGT Gene: IL1242: Co/Zn/Cd efflux protein Site: position = -61 score = 5.49582 sequence = ACCTTATAGTAGCTTTATAGT Gene: IL0632: Co/Zn/Cd efflux protein	Co/Zn/Cd efflux protein
lspA2	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145 Gene: OS145_03973: Lipoprotein signal peptidase (EC 3.4.23.36)	2 Idiomarina loihiensis L2TR Gene: IL1241: Lipoprotein signal peptidase (EC 3.4.23.36) Gene: IL0633: Lipoprotein signal peptidase (EC 3.4.23.36)	Lipoprotein signal peptidase (EC 3.4.23.36)

CRON 2.
czcD	2 Pseudoalteromonas atlantica T6c* Site: position = -60 score = 4.56606 sequence = ACTCTATACTTAGTATAGACT Gene: Patl_2025: Co/Zn/Cd efflux protein Gene: Patl_2027: Co/Zn/Cd efflux protein	Alteromonas macleodii 'Deep ecotype' Gene: MADE_02030: Co/Zn/Cd efflux protein	Glaciecola sp. HTCC2999 Gene: GHTCC_010100000545: Co/Zn/Cd efflux protein	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	2 Idiomarina baltica OS145* Site: position = -61 score = 5.49582 sequence = ACCTTATAGTAGCTTTATAGT Gene: OS145_03758: Co/Zn/Cd efflux protein Site: position = -61 score = 5.49582 sequence = ACCTTATAGTAGCTTTATAGT Gene: OS145_01757: Co/Zn/Cd efflux protein	* Idiomarina loihiensis L2TR Site: position = -161 score = 5.64006 sequence = ACCTTATAGTAACTTTATAGT Gene: IL1636: Co/Zn/Cd efflux protein	Co/Zn/Cd efflux protein
Patl_2026	Pseudoalteromonas atlantica T6c Gene: Patl_2026: hypothetical protein	Alteromonas macleodii 'Deep ecotype'	* Glaciecola sp. HTCC2999 Site: position = -78 score = 5.15573 sequence = ACCCTATACTTGGTATAGAGT Gene: GHTCC_010100000540: hypothetical protein	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	hypothetical protein
Patl_2028	Pseudoalteromonas atlantica T6c Gene: Patl_2028: hypothetical protein	Alteromonas macleodii 'Deep ecotype' Gene: MADE_02031: hypothetical protein	Glaciecola sp. HTCC2999 Gene: GHTCC_010100000550: hypothetical protein	Colwellia psychrerythraea 34H Gene: CPS_2870: hypothetical protein	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	hypothetical protein
czcC	Pseudoalteromonas atlantica T6c Gene: Patl_2029: Heavy metal efflux RND outer membrane protein	Alteromonas macleodii 'Deep ecotype' Gene: MADE_02027: Heavy metal efflux RND outer membrane protein	Glaciecola sp. HTCC2999 Gene: GHTCC_010100000555: Heavy metal efflux RND outer membrane protein	Colwellia psychrerythraea 34H Gene: CPS_1957: Heavy metal efflux RND outer membrane protein	Alteromonadales bacterium TW-7 Gene: ATW7_03857: Heavy metal efflux RND outer membrane protein	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa0577: Heavy metal efflux RND outer membrane protein	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145 Gene: OS145_01742: Heavy metal efflux RND outer membrane protein	2 Idiomarina loihiensis L2TR Gene: IL0779: Heavy metal efflux RND outer membrane protein Gene: IL1634: Heavy metal efflux RND outer membrane protein	Heavy metal efflux RND outer membrane protein
czcB	Pseudoalteromonas atlantica T6c Gene: Patl_2030: Heavy metal efflux RND transporter, membrane fusion protein	Alteromonas macleodii 'Deep ecotype' Gene: MADE_02028: Heavy metal efflux RND transporter, membrane fusion protein	Glaciecola sp. HTCC2999 Gene: GHTCC_010100000560: Heavy metal efflux RND transporter, membrane fusion protein	Colwellia psychrerythraea 34H Gene: CPS_1958: Heavy metal efflux RND transporter, membrane fusion protein	Alteromonadales bacterium TW-7 Gene: ATW7_03862: Heavy metal efflux RND transporter, membrane fusion protein	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa0578: Heavy metal efflux RND transporter, membrane fusion protein	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145 Gene: OS145_01737: Heavy metal efflux RND transporter, membrane fusion protein	2 Idiomarina loihiensis L2TR Gene: IL0778: Heavy metal efflux RND transporter, membrane fusion protein Gene: IL1633: Heavy metal efflux RND transporter, membrane fusion protein	Heavy metal efflux RND transporter, membrane fusion protein
czcA	Pseudoalteromonas atlantica T6c Gene: Patl_2031: Heavy metal efflux RND transmembrane protein	Alteromonas macleodii 'Deep ecotype' Gene: MADE_02029: Heavy metal efflux RND transmembrane protein	Glaciecola sp. HTCC2999 Gene: GHTCC_010100000565: Heavy metal efflux RND transmembrane protein	Colwellia psychrerythraea 34H Gene: CPS_1959: Heavy metal efflux RND transmembrane protein	Alteromonadales bacterium TW-7 Gene: ATW7_03867: Heavy metal efflux RND transmembrane protein	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa0579: Heavy metal efflux RND transmembrane protein	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145 Gene: OS145_01732: Heavy metal efflux RND transmembrane protein	2 Idiomarina loihiensis L2TR Gene: IL0777: Heavy metal efflux RND transmembrane protein Gene: IL1632: Heavy metal efflux RND transmembrane protein	Heavy metal efflux RND transmembrane protein
lspA	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	2 Idiomarina baltica OS145 Gene: OS145_03763: Lipoprotein signal peptidase (EC 3.4.23.36) Gene: OS145_01752: Lipoprotein signal peptidase (EC 3.4.23.36)	Idiomarina loihiensis L2TR Gene: IL1635: Lipoprotein signal peptidase (EC 3.4.23.36)	Lipoprotein signal peptidase (EC 3.4.23.36)
OS145_01747	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145 Gene: OS145_01747: hypothetical protein	Idiomarina loihiensis L2TR Gene: IL0780: hypothetical protein	hypothetical protein
ATW7_03852	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7 Gene: ATW7_03852: conserved protein of unknown function	* Pseudoalteromonas haloplanktis TAC125 Site: position = -93 score = 5.18325 sequence = ACCTTCCAGTAACTAGAAGGT Gene: PSHAa0576: conserved protein of unknown function	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	conserved protein of unknown function

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog CadR-PbrR - Alteromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --