Regulog MerR - Alteromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	MerR
Regulation mode:	activator
Biological process:	Mercury resistance
Effector:	Mercury ion, (Hg2+)
Phylum:	Proteobacteria/Gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 6 sites [see more]

Member of regulog collections

By taxonomy - Alteromonadales
By trascription factor - MerR
By TF family - MerR
By effector - Mercury ion, (Hg2+)
By pathway - Mercury resistance

Statistics of regulated genes
Genome	Genes	Operons
Pseudoalteromonas atlantica T6c
Alteromonas macleodii 'Deep ecotype'	10	4
Glaciecola sp. HTCC2999
Colwellia psychrerythraea 34H
Alteromonadales bacterium TW-7
Pseudoalteromonas haloplanktis TAC125
Pseudoalteromonas tunicata D2
Idiomarina baltica OS145	3	1
Idiomarina loihiensis L2TR	3	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes										Function

CRON 1.
merT4	Pseudoalteromonas atlantica T6c	* Alteromonas macleodii 'Deep ecotype' Site: position = -61 score = 5.15614 sequence = ACAGCGTACATTAGTACGGCAT Gene: MADE_02957: Mercury uptake inner membane protein	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Mercury uptake inner membane protein

CRON 2.
merT2	Pseudoalteromonas atlantica T6c	* Alteromonas macleodii 'Deep ecotype' Site: position = -83 score = 4.99202 sequence = ACTCCGTACTTAGGTACATGCA Gene: MADE_01411: Mercury uptake inner membane protein	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Mercury uptake inner membane protein
merP2	Pseudoalteromonas atlantica T6c	2 Alteromonas macleodii 'Deep ecotype' Gene: MADE_02043: Periplasmic mercury(+2) binding protein Gene: MADE_01410: Periplasmic mercury(+2) binding protein	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Periplasmic mercury(+2) binding protein
merC2	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype' Gene: MADE_01409: Mercury uptake inner membane protein	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Mercury uptake inner membane protein
merA2	Pseudoalteromonas atlantica T6c	2 Alteromonas macleodii 'Deep ecotype' Gene: MADE_01408: Mercuric ion reductase (EC 1.16.1.1) Gene: MADE_02044: Mercuric ion reductase (EC 1.16.1.1)	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Mercuric ion reductase (EC 1.16.1.1)
merD2	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype' Gene: MADE_01407: Mercuric resistance operon coregulator	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Mercuric resistance operon coregulator

CRON 3.
merT3	Pseudoalteromonas atlantica T6c	* Alteromonas macleodii 'Deep ecotype' Site: position = -149 score = 5.29407 sequence = ACTCGGTACCACGGTACTGAGT Gene: MADE_02959: Mercury uptake inner membane protein	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Mercury uptake inner membane protein
merP3	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype' Gene: MADE_02958: Periplasmic mercury(+2) binding protein	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Periplasmic mercury(+2) binding protein

CRON 4.
merT	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	* Idiomarina baltica OS145 Site: position = -66 score = 5.06231 sequence = CTTCCGTAGTGAGGTACGGGTC Gene: OS145_03813: Mercury uptake inner membane protein	* Idiomarina loihiensis L2TR Site: position = -66 score = 5.30676 sequence = CTTCCGTAGTGAGGTACGGGTT Gene: IL1644: Mercury uptake inner membane protein	Mercury uptake inner membane protein
merP	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145 Gene: OS145_03818: Periplasmic mercury(+2) binding protein	Idiomarina loihiensis L2TR Gene: IL1645: Periplasmic mercury(+2) binding protein	Periplasmic mercury(+2) binding protein
merA	Pseudoalteromonas atlantica T6c	* Alteromonas macleodii 'Deep ecotype' Site: position = -10 score = 6.09032 sequence = ACTCCGTACAATGGTACGGCGT Gene: MADE_02949: Mercuric ion reductase (EC 1.16.1.1)	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145 Gene: OS145_03823: Mercuric ion reductase (EC 1.16.1.1)	Idiomarina loihiensis L2TR Gene: IL1646: Mercuric ion reductase (EC 1.16.1.1)	Mercuric ion reductase (EC 1.16.1.1)
merB	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype' Gene: MADE_02948: Organomercurial lyase	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Organomercurial lyase

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog MerR - Alteromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --