Regulog NmlR - Rhizobiales

Properties
Regulator type:	Transcription factor
Regulator family:	MerR
Regulation mode:	activator
Biological process:	Carbonyl stress response
Effector:	Diamide
Phylum:	Proteobacteria/alpha
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 2 sites [see more]

Member of regulog collections

By taxonomy - Rhizobiales
By trascription factor - NmlR
By TF family - MerR
By effector - Diamide
By pathway - Carbonyl stress response

Statistics of regulated genes
Genome	Genes	Operons
Sinorhizobium meliloti 1021
Rhizobium sp. NGR234
Rhizobium leguminosarum bv. viciae 3841
Rhizobium etli CFN 42
Agrobacterium tumefaciens str. C58 (Cereon)
Mesorhizobium sp. BNC1
Mesorhizobium loti MAFF303099
Brucella melitensis 16M
Bartonella quintana str. Toulouse
Rhodopseudomonas palustris CGA009
Bradyrhizobium japonicum USDA 110	2	1
Bradyrhizobium sp. BTAi1	2	1
Nitrobacter winogradskyi Nb-255
Azorhizobium caulinodans ORS 571
Xanthobacter autotrophicus Py2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
nmlR	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	* Bradyrhizobium japonicum USDA 110 Site: position = -56 score = 5.96781 sequence = CTTAGAGTGCGCTCGAAG Gene: bll4578: Carbonyl stress transcriptional regulator, MerR family	* Bradyrhizobium sp. BTAi1 Site: position = -57 score = 5.29087 sequence = CTTAGAGCGCGCTCGAAC Gene: BBta_0836: Carbonyl stress transcriptional regulator, MerR family	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	Carbonyl stress transcriptional regulator, MerR family
pcaC	Sinorhizobium meliloti 1021	Rhizobium sp. NGR234	Rhizobium leguminosarum bv. viciae 3841	Rhizobium etli CFN 42	Agrobacterium tumefaciens str. C58 (Cereon)	Mesorhizobium sp. BNC1	Mesorhizobium loti MAFF303099	Brucella melitensis 16M	Bartonella quintana str. Toulouse	Rhodopseudomonas palustris CGA009	Bradyrhizobium japonicum USDA 110 Gene: bsl4577: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44)	Bradyrhizobium sp. BTAi1 Gene: BBta_0837: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44)	Nitrobacter winogradskyi Nb-255	Azorhizobium caulinodans ORS 571	Xanthobacter autotrophicus Py2	4-carboxymuconolactone decarboxylase (EC 4.1.1.44)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog NmlR - Rhizobiales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --