Regulog NmlR - Comamonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | MerR |
| Regulation mode: | activator |
| Biological process: | Carbonyl stress response |
| Effector: | Diamide |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Comamonadaceae
- By trascription factor - NmlR
- By TF family - MerR
- By effector - Diamide
- By pathway - Carbonyl stress response
| Genome | Genes | Operons |
|---|---|---|
| Acidovorax avenae subsp. citrulli AAC00-1 | ||
| Acidovorax sp. JS42 | ||
| Comamonas testosteroni KF-1 | ||
| Delftia acidovorans SPH-1 | ||
| Polaromonas naphthalenivorans CJ2 | 2 | 1 |
| Polaromonas sp. JS666 | ||
| Rhodoferax ferrireducens DSM 15236 | 2 | 1 |
| Variovorax paradoxus S110 | ||
| Verminephrobacter eiseniae EF01-2 | ||
| Methylibium petroleiphilum PM1 | ||
| Leptothrix cholodnii SP-6 |
| Genes | Function | |||||||||||
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| CRON 1. | ||||||||||||
| nmlR |
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Polaromonas naphthalenivorans CJ2 Site: position = -35 score = 4.82181 sequence = CTTGGAGCGCGCTCTAAC Gene: Pnap_2189: Carbonyl stress transcriptional regulator, MerR family |
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Rhodoferax ferrireducens DSM 15236 Site: position = -33 score = 5.03791 sequence = CTTCGAGTGCACTCGAAG Gene: Rfer_4023: Carbonyl stress transcriptional regulator, MerR family |
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Carbonyl stress transcriptional regulator, MerR family |
| pcaC |
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Gene: Pnap_2188: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) |
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Gene: Vapar_3680: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) |
Gene: Veis_1856: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) |
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4-carboxymuconolactone decarboxylase (EC 4.1.1.44) |
| PF00248 |
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Gene: Rfer_4022: Aldo/keto reductase |
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Aldo/keto reductase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |