Regulog NmlR - Burkholderia
| Regulator type: | Transcription factor |
| Regulator family: | MerR |
| Regulation mode: | activator |
| Biological process: | Carbonyl stress response |
| Effector: | Diamide |
| Phylum: | Proteobacteria/Beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Burkholderia
- By trascription factor - NmlR
- By TF family - MerR
- By effector - Diamide
- By pathway - Carbonyl stress response
| Genome | Genes | Operons |
|---|---|---|
| Burkholderia pseudomallei K96243 | 2 | 1 |
| Burkholderia mallei ATCC 23344 | 1 | 1 |
| Burkholderia sp. 383 | 3 | 2 |
| Burkholderia cepacia AMMD | 2 | 1 |
| Burkholderia vietnamiensis G4 | 2 | 1 |
| Burkholderia glumae BGR1 | ||
| Burkholderia xenovorans LB400 | 2 | 1 |
| Burkholderia phymatum STM815 | 2 | 1 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| nmlR |
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Burkholderia pseudomallei K96243 Site: position = -37 score = 6.22622 sequence = CTTAGAGTGCACTCTAAG Gene: BPSL1487: Carbonyl stress transcriptional regulator, MerR family |
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Burkholderia mallei ATCC 23344 Site: position = -37 score = 6.22622 sequence = CTTAGAGTGCACTCTAAG Gene: BMA1374: Carbonyl stress transcriptional regulator, MerR family |
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Burkholderia sp. 383 Site: position = -37 score = 6.08609 sequence = CTTAGAGTGAACTCTAAC Gene: Bcep18194_A5145: Carbonyl stress transcriptional regulator, MerR family |
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Burkholderia cepacia AMMD Site: position = -37 score = 6.08609 sequence = CTTAGAGTGAACTCTAAC Gene: Bamb_1782: Carbonyl stress transcriptional regulator, MerR family |
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Burkholderia vietnamiensis G4 Site: position = -37 score = 6.08609 sequence = CTTAGAGTGAACTCTAAC Gene: Bcep1808_1771: Carbonyl stress transcriptional regulator, MerR family |
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Burkholderia xenovorans LB400 Site: position = -37 score = 5.63207 sequence = CTTAGAGTGCACTCGAAG Gene: Bxe_A2371: Carbonyl stress transcriptional regulator, MerR family |
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Burkholderia phymatum STM815 Site: position = -37 score = 5.87244 sequence = CTTAGAGTTCACTCGAAG Gene: Bphy_0943: Carbonyl stress transcriptional regulator, MerR family |
Carbonyl stress transcriptional regulator, MerR family |
| pcaC |
Gene: BPSL1488: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) |
Gene: BMA1373: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) |
Gene: Bcep18194_A5144: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) |
Gene: Bamb_1781: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) |
Gene: Bcep1808_1770: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) |
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Gene: Bxe_A2370: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) |
Gene: Bphy_0944: 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) |
4-carboxymuconolactone decarboxylase (EC 4.1.1.44) |
| CRON 2. | |||||||||
| PF00724 |
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Burkholderia sp. 383 Site: position = -54 score = 5.89866 sequence = CTTAAAGTTGACTTTAAA Gene: Bcep18194_B2709: NADH:flavin oxidoreductase |
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NADH:flavin oxidoreductase |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |