Regulog HrcA - Burkholderia
| Regulator type: | Transcription factor |
| Regulator family: | HrcA |
| Regulation mode: | repressor |
| Biological process: | Heat shock response |
| Effector: | Heat shock |
| Phylum: | Proteobacteria/beta |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Burkholderia
- By trascription factor - HrcA
- By TF family - HrcA
- By effector - Heat shock
- By pathway - Heat shock response
| Genome | Genes | Operons |
|---|---|---|
| Burkholderia pseudomallei K96243 | 3 | 2 |
| Burkholderia mallei ATCC 23344 | 3 | 2 |
| Burkholderia sp. 383 | 3 | 2 |
| Burkholderia cepacia AMMD | 3 | 2 |
| Burkholderia vietnamiensis G4 | 3 | 2 |
| Burkholderia glumae BGR1 | 3 | 2 |
| Burkholderia xenovorans LB400 | 3 | 2 |
| Burkholderia phymatum STM815 | 3 | 2 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| groS |
*
Burkholderia pseudomallei K96243 Site: position = -103 score = 7.92574 sequence = TTAGCACTCGCTGCACGAGAGTGCTAA Gene: BPSL2698: Heat shock protein 60 family co-chaperone GroES |
*
Burkholderia mallei ATCC 23344 Site: position = -103 score = 7.92574 sequence = TTAGCACTCGCTGCACGAGAGTGCTAA Gene: BMA2002: Heat shock protein 60 family co-chaperone GroES |
*
Burkholderia sp. 383 Site: position = -100 score = 7.92574 sequence = TTAGCACTCGCTGCACGAGAGTGCTAA Gene: Bcep18194_A3954: Heat shock protein 60 family co-chaperone GroES |
*
Burkholderia cepacia AMMD Site: position = -100 score = 7.92574 sequence = TTAGCACTCGCTGCACGAGAGTGCTAA Gene: Bamb_0732: Heat shock protein 60 family co-chaperone GroES |
*
Burkholderia vietnamiensis G4 Site: position = -100 score = 7.92574 sequence = TTAGCACTCGCTGCACGAGAGTGCTAA Gene: Bcep1808_0793: Heat shock protein 60 family co-chaperone GroES |
*
Burkholderia glumae BGR1 Site: position = -98 score = 7.92574 sequence = TTAGCACTCGCTGCACGAGAGTGCTAA Gene: bglu_1g07140: Heat shock protein 60 family co-chaperone GroES |
*
Burkholderia xenovorans LB400 Site: position = -99 score = 7.92574 sequence = TTAGCACTCGCTGCACGAGAGTGCTAA Gene: Bxe_A3816: Heat shock protein 60 family co-chaperone GroES |
*
Burkholderia phymatum STM815 Site: position = -100 score = 7.55871 sequence = TTAGCACTCACCGCACGAGAGTGCTAA Gene: Bphy_2334: Heat shock protein 60 family co-chaperone GroES |
Heat shock protein 60 family co-chaperone GroES |
| groL |
Gene: BPSL2697: Heat shock protein 60 family chaperone GroEL |
Gene: BMA2001: Heat shock protein 60 family chaperone GroEL |
Gene: Bcep18194_A3955: Heat shock protein 60 family chaperone GroEL |
Gene: Bamb_0733: Heat shock protein 60 family chaperone GroEL |
Gene: Bcep1808_0794: Heat shock protein 60 family chaperone GroEL |
Gene: bglu_1g07150: Heat shock protein 60 family chaperone GroEL |
Gene: Bxe_A3815: Heat shock protein 60 family chaperone GroEL |
Gene: Bphy_2333: Heat shock protein 60 family chaperone GroEL |
Heat shock protein 60 family chaperone GroEL |
| CRON 2. | |||||||||
| rpoH |
*
Burkholderia pseudomallei K96243 Site: position = -88 score = 7.16616 sequence = TTAGCACTCCAGTAGACGGAGTGCTAA Gene: BPSL0504: Heat shock response RNA polymerase sigma factor RpoH (Sigma 32) |
*
Burkholderia mallei ATCC 23344 Site: position = -88 score = 7.16616 sequence = TTAGCACTCCAGTAGACGGAGTGCTAA Gene: BMA3138: Heat shock response RNA polymerase sigma factor RpoH (Sigma 32) |
*
Burkholderia sp. 383 Site: position = -90 score = 7.22683 sequence = TTAGCACTCGTCTTGCGGGAGTGCTAA Gene: Bcep18194_A6145: Heat shock response RNA polymerase sigma factor RpoH (Sigma 32) |
*
Burkholderia cepacia AMMD Site: position = -89 score = 7.51569 sequence = TTAGCACTCGGATTCCGGGAGTGCTAA Gene: Bamb_2875: Heat shock response RNA polymerase sigma factor RpoH (Sigma 32) |
*
Burkholderia vietnamiensis G4 Site: position = -28 score = 7.6004 sequence = TTAGCACTCGGATTACGGGAGTGCTAA Gene: Bcep1808_2920: Heat shock response RNA polymerase sigma factor RpoH (Sigma 32) |
*
Burkholderia glumae BGR1 Site: position = -85 score = 7.9093 sequence = TTAGCACTCTCCTGACGAGAGTGCTAA Gene: bglu_1g31450: Heat shock response RNA polymerase sigma factor RpoH (Sigma 32) |
*
Burkholderia xenovorans LB400 Site: position = -100 score = 7.00992 sequence = TTAGCACTCGGCAAATCAGAGTGCTAA Gene: Bxe_A4146: Heat shock response RNA polymerase sigma factor RpoH (Sigma 32) |
*
Burkholderia phymatum STM815 Site: position = -82 score = 7.3282 sequence = TTAGCACTCGGTAGATGAGAGTGCTAA Gene: Bphy_0301: Heat shock response RNA polymerase sigma factor RpoH (Sigma 32) |
Heat shock response RNA polymerase sigma factor RpoH (Sigma 32) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |