Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog RL3595 - Rhizobiales

Properties
Regulator type: Transcription factor
Regulator family: LacI
Regulation mode: repressor
Biological process: Sugar utilization
Effector:
Phylum: Proteobacteria/Alpha
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 8 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Agrobacterium tumefaciens str. C58 (Cereon) 3 2
Azorhizobium caulinodans ORS 571 3 2
Rhizobium leguminosarum bv. viciae 3841 3 2
Rhizobium sp. NGR234
Rhizobium etli CFN 42 3 2
Sinorhizobium meliloti 1021
Xanthobacter autotrophicus Py2
Mesorhizobium loti MAFF303099
Mesorhizobium sp. BNC1
Rhodopseudomonas palustris CGA009
Bradyrhizobium japonicum USDA 110
Bradyrhizobium sp. BTAi1
Nitrobacter winogradskyi Nb-255
Bartonella quintana str. Toulouse
Brucella melitensis 16M
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF00701
*
Agrobacterium tumefaciens str. C58 (Cereon)

Site:
position = -82
score = 7.04236
sequence = TAACGGGAACGTTCCCATTA

Gene: Atu5394: Dihydrodipicolinate synthase-like protein
*
Azorhizobium caulinodans ORS 571

Site:
position = -93
score = 6.65526
sequence = TGATGGGAACGTTCCCGCTA

Gene: AZC_2857: Dihydrodipicolinate synthase-like protein
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -74
score = 6.73823
sequence = TAGTGGGAACGTTCCCGTAA

Gene: RL3594: Dihydrodipicolinate synthase-like protein
 
Rhizobium sp. NGR234
*
Rhizobium etli CFN 42

Site:
position = -73
score = 6.90024
sequence = TAGTGGGAACGTTCCCAATA

Gene: RHE_CH03149: Dihydrodipicolinate synthase-like protein
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Rhodopseudomonas palustris CGA009
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1

Gene: BBta_1167: Dihydrodipicolinate synthase-like protein
 
Nitrobacter winogradskyi Nb-255
 
Bartonella quintana str. Toulouse
 
Brucella melitensis 16M
Dihydrodipicolinate synthase-like protein
PF00083
 
Agrobacterium tumefaciens str. C58 (Cereon)

Gene: Atu5395: Putative sugar phosphate permease, MFS superfamily
 
Azorhizobium caulinodans ORS 571

Gene: AZC_2858: Putative sugar phosphate permease, MFS superfamily
 
Rhizobium leguminosarum bv. viciae 3841

Gene: RL3593: Putative sugar phosphate permease, MFS superfamily
 
Rhizobium sp. NGR234
 
Rhizobium etli CFN 42

Gene: RHE_CH03148: Putative sugar phosphate permease, MFS superfamily
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Rhodopseudomonas palustris CGA009
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Nitrobacter winogradskyi Nb-255
 
Bartonella quintana str. Toulouse
 
Brucella melitensis 16M
Putative sugar phosphate permease, MFS superfamily
 
CRON 2.
RL3595
*
Agrobacterium tumefaciens str. C58 (Cereon)

Site:
position = -109
score = 7.04236
sequence = TAATGGGAACGTTCCCGTTA

Gene: Atu5393: Putative regulator of PF00701, LacI family
*
Azorhizobium caulinodans ORS 571

Site:
position = -28
score = 6.65526
sequence = TAGCGGGAACGTTCCCATCA

Gene: AZC_2856: Putative regulator of PF00701, LacI family
*
Rhizobium leguminosarum bv. viciae 3841

Site:
position = -107
score = 6.73823
sequence = TTACGGGAACGTTCCCACTA

Gene: RL3595: Putative regulator of PF00701, LacI family
 
Rhizobium sp. NGR234
*
Rhizobium etli CFN 42

Site:
position = -108
score = 6.90024
sequence = TATTGGGAACGTTCCCACTA

Gene: RHE_CH03150: Putative regulator of PF00701, LacI family
 
Sinorhizobium meliloti 1021
 
Xanthobacter autotrophicus Py2
 
Mesorhizobium loti MAFF303099
 
Mesorhizobium sp. BNC1
 
Rhodopseudomonas palustris CGA009
 
Bradyrhizobium japonicum USDA 110
 
Bradyrhizobium sp. BTAi1
 
Nitrobacter winogradskyi Nb-255
 
Bartonella quintana str. Toulouse
 
Brucella melitensis 16M
Putative regulator of PF00701, LacI family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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