Regulog TPP - Streptomycetaceae
| Regulator type: | RNA regulatory element |
| Name: | TPP |
| RFAM: | RF00059 |
| Regulation mode: | |
| Biological process: | Thiamine biosynthesis |
| Effector: | Thiamine pyrophosphate |
| Phylum: | Actinobacteria |
Member of regulog collections
- By taxonomy - Streptomycetaceae
- By RNA motif - TPP
- By effector - Thiamine pyrophosphate
- By pathway - Thiamine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Streptomyces griseus subsp. griseus NBRC 13350 | 7 | 3 |
| Streptomyces scabiei 87.22 | 7 | 3 |
| Streptomyces avermitilis MA-4680 | 9 | 4 |
| Streptomyces coelicolor A3(2) | 7 | 3 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| thiO |
*
Streptomyces griseus subsp. griseus NBRC 13350 Site: position = -111 score = 54.48 sequence = GTAGAACACTCGCGG... Gene: SGR_5394: Glycine oxidase ThiO (EC 1.4.3.19) |
*
Streptomyces scabiei 87.22 Site: position = -110 score = 53.09 sequence = GTAGAGCACTCGCGG... Gene: SCAB_67741: Glycine oxidase ThiO (EC 1.4.3.19) |
*
Streptomyces avermitilis MA-4680 Site: position = -112 score = 54.26 sequence = GTAAAGCACTCGCGG... Gene: SAV_6095: Glycine oxidase ThiO (EC 1.4.3.19) |
*
Streptomyces coelicolor A3(2) Site: position = -108 score = 50.41 sequence = AAGGCACTCGCGGGA... Gene: SCO2107: Glycine oxidase ThiO (EC 1.4.3.19) |
Glycine oxidase ThiO (EC 1.4.3.19) |
| thiS |
Gene: SGR_5393: Sulfur carrier protein ThiS |
Gene: SCAB_67731: Sulfur carrier protein ThiS |
Gene: SAV_6094: Sulfur carrier protein ThiS |
Gene: SCO2108: Sulfur carrier protein ThiS |
Sulfur carrier protein ThiS |
| thiG |
Gene: SGR_5392: Thiazole biosynthesis protein ThiG |
Gene: SCAB_67721: Thiazole biosynthesis protein ThiG |
Gene: SAV_6093: Thiazole biosynthesis protein ThiG |
Gene: SCO2109: Thiazole biosynthesis protein ThiG |
Thiazole biosynthesis protein ThiG |
| CRON 2. | |||||
| thiB |
*
Streptomyces griseus subsp. griseus NBRC 13350 Site: position = -121 score = 49.1 sequence = CATATTCCGACAGGG... Gene: SGR_1857: Thiamin ABC transporter, substrate-binding component |
*
Streptomyces scabiei 87.22 Site: position = -188 score = 49.19 sequence = CATATTCCGACAGGG... Gene: SCAB_25941: Thiamin ABC transporter, substrate-binding component |
*
Streptomyces avermitilis MA-4680 Site: position = -187 score = 51.44 sequence = CATATTCCGACAGGG... Gene: SAV_2620: Thiamin ABC transporter, substrate-binding component |
*
Streptomyces coelicolor A3(2) Site: position = -184 score = 51.18 sequence = TATTCCGACAGGGGA... Gene: SCO5646: Thiamin ABC transporter, substrate-binding component |
Thiamin ABC transporter, substrate-binding component |
| thiP |
Gene: SGR_1856: Thiamin ABC transporter, transmembrane component |
Gene: SCAB_25931: Thiamin ABC transporter, transmembrane component |
Gene: SAV_2619: Thiamin ABC transporter, transmembrane component |
Gene: SCO5647: Thiamin ABC transporter, transmembrane component |
Thiamin ABC transporter, transmembrane component |
| thiQ |
Gene: SGR_1855: Thiamin ABC transporter, ATPase component |
Gene: SCAB_25921: Thiamin ABC transporter, ATPase component |
Gene: SAV_2618: Thiamin ABC transporter, ATPase component |
Gene: SCO5648: Thiamin ABC transporter, ATPase component |
Thiamin ABC transporter, ATPase component |
| CRON 3. | |||||
| cytX |
|
|
*
Streptomyces avermitilis MA-4680 Site: position = -87 score = 65.95 sequence = CGTACCGGACACGGG... Gene: SAV_7206: Predicted hydroxymethylpyrimidine transporter CytX |
|
Predicted hydroxymethylpyrimidine transporter CytX |
| thiD |
Gene: SGR_1917: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: SCAB_26491: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: SAV_7205: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: SCO5563: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
| CRON 4. | |||||
| thiC |
*
Streptomyces griseus subsp. griseus NBRC 13350 Site: position = -127 score = 41.95 sequence = CCTTTGCACACGCGG... Gene: SGR_3653: Thiamin biosynthesis protein ThiC |
*
Streptomyces scabiei 87.22 Site: position = -148 score = 39.37 sequence = TTTGCACACGCGGGA... Gene: SCAB_46341: Thiamin biosynthesis protein ThiC |
*
Streptomyces avermitilis MA-4680 Site: position = -150 score = 39.87 sequence = CCTTTGCACACGCGG... Gene: SAV_4265: Thiamin biosynthesis protein ThiC |
*
Streptomyces coelicolor A3(2) Site: position = -54 score = 22.76 sequence = TGCGTCGACCGCCGA... Gene: SCO3928: Thiamin biosynthesis protein ThiC |
Thiamin biosynthesis protein ThiC |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |