Regulog TPP - Rhodospirillales

Properties
Regulator type:	RNA regulatory element
Name:	TPP
RFAM:	RF00059
Regulation mode:
Biological process:	Thiamine biosynthesis
Effector:	Thiamine pyrophosphate
Phylum:	Proteobacteria/Alpha

Member of regulog collections

By taxonomy - Rhodospirillales
By RNA motif - TPP
By effector - Thiamine pyrophosphate
By pathway - Thiamine biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Rhodospirillum rubrum ATCC 11170	1	1
Magnetospirillum magnetotacticum MS-1	2	2
Magnetospirillum magneticum AMB-1	1	1
Azospirillum sp. B510	7	3
Rhodospirillum centenum SW	4	2
Gluconacetobacter diazotrophicus PAl 5	1	1
Acetobacter pasteurianus IFO 3283-01	2	2
Gluconobacter oxydans 621H	9	2
Granulibacter bethesdensis CGDNIH1	1	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes										Function

CRON 1.
thiZ	Rhodospirillum rubrum ATCC 11170 Gene: Rru_A1644: Hydroxymethylpyrimidine ABC transporter, ATPase component	Magnetospirillum magnetotacticum MS-1	Magnetospirillum magneticum AMB-1	* Azospirillum sp. B510 Site: position = -147 score = 64.01 sequence = CCTTCACTGGGGGGA... Gene: AZL_014930: Hydroxymethylpyrimidine ABC transporter, ATPase component	Rhodospirillum centenum SW	Gluconacetobacter diazotrophicus PAl 5 Gene: Gdia_3268: Hydroxymethylpyrimidine ABC transporter, ATPase component	Acetobacter pasteurianus IFO 3283-01	Gluconobacter oxydans 621H	Granulibacter bethesdensis CGDNIH1	Hydroxymethylpyrimidine ABC transporter, ATPase component
thiX	Rhodospirillum rubrum ATCC 11170 Gene: Rru_A1643: Hydroxymethylpyrimidine ABC transporter, transmembrane component	Magnetospirillum magnetotacticum MS-1	Magnetospirillum magneticum AMB-1	Azospirillum sp. B510 Gene: AZL_014940: Hydroxymethylpyrimidine ABC transporter, transmembrane component	Rhodospirillum centenum SW	Gluconacetobacter diazotrophicus PAl 5 Gene: Gdia_3269: Hydroxymethylpyrimidine ABC transporter, transmembrane component	Acetobacter pasteurianus IFO 3283-01	Gluconobacter oxydans 621H	Granulibacter bethesdensis CGDNIH1	Hydroxymethylpyrimidine ABC transporter, transmembrane component
thiY	Rhodospirillum rubrum ATCC 11170 Gene: Rru_A1642: Hydroxymethylpyrimidine ABC transporter, substrate-binding component	Magnetospirillum magnetotacticum MS-1	Magnetospirillum magneticum AMB-1	Azospirillum sp. B510 Gene: AZL_014950: Hydroxymethylpyrimidine ABC transporter, substrate-binding component	Rhodospirillum centenum SW	Gluconacetobacter diazotrophicus PAl 5 Gene: Gdia_1887: Hydroxymethylpyrimidine ABC transporter, substrate-binding component	Acetobacter pasteurianus IFO 3283-01	Gluconobacter oxydans 621H	Granulibacter bethesdensis CGDNIH1	Hydroxymethylpyrimidine ABC transporter, substrate-binding component

CRON 2.
omp_thi	Rhodospirillum rubrum ATCC 11170	Magnetospirillum magnetotacticum MS-1	Magnetospirillum magneticum AMB-1	Azospirillum sp. B510	Rhodospirillum centenum SW	Gluconacetobacter diazotrophicus PAl 5 Gene: Gdia_0913: Predicted thiamin-specific outer membrane transporter, TonB-dependent	Acetobacter pasteurianus IFO 3283-01 Gene: APA01_05460: Predicted thiamin-specific outer membrane transporter, TonB-dependent	* Gluconobacter oxydans 621H Site: position = -223 score = 63.14 sequence = ACGCTTCACCGTGGG... Gene: GOX1347: Predicted thiamin-specific outer membrane transporter, TonB-dependent	Granulibacter bethesdensis CGDNIH1	Predicted thiamin-specific outer membrane transporter, TonB-dependent
thiK	Rhodospirillum rubrum ATCC 11170	Magnetospirillum magnetotacticum MS-1	Magnetospirillum magneticum AMB-1	Azospirillum sp. B510	Rhodospirillum centenum SW	Gluconacetobacter diazotrophicus PAl 5	Acetobacter pasteurianus IFO 3283-01 Gene: APA01_05470: predicted thiamine kinase, aminoglycoside phosphotransferase family	Gluconobacter oxydans 621H Gene: GOX1346: predicted thiamine kinase, aminoglycoside phosphotransferase family	Granulibacter bethesdensis CGDNIH1	predicted thiamine kinase, aminoglycoside phosphotransferase family
pnuT	Rhodospirillum rubrum ATCC 11170	Magnetospirillum magnetotacticum MS-1	Magnetospirillum magneticum AMB-1	Azospirillum sp. B510	Rhodospirillum centenum SW	Gluconacetobacter diazotrophicus PAl 5	Acetobacter pasteurianus IFO 3283-01 Gene: APA01_05480: Predicted thiamin transporter PnuT	Gluconobacter oxydans 621H Gene: GOX1345: Predicted thiamin transporter PnuT	Granulibacter bethesdensis CGDNIH1	Predicted thiamin transporter PnuT

CRON 3.
thiC	* Rhodospirillum rubrum ATCC 11170 Site: position = -205 score = 56.43 sequence = ACCTGTTCCAGGGGG... Gene: Rru_A2008: Thiamin biosynthesis protein ThiC	3 Magnetospirillum magnetotacticum MS-1* Site: position = -169 score = 75.16 sequence = CATCTTTCCGAAGGG... Gene: Magn03010971: Thiamin biosynthesis protein ThiC Gene: Magn03001752: Thiamin biosynthesis protein ThiC Gene: Magn03002735: Thiamin biosynthesis protein ThiC	* Magnetospirillum magneticum AMB-1 Site: position = -63 score = 73.85 sequence = CATCTTTCCGAAGGG... Gene: amb0221: Thiamin biosynthesis protein ThiC	* Azospirillum sp. B510 Site: position = -260 score = 54.35 sequence = TCCAGGGGGGTCCCG... Gene: AZL_005290: Thiamin biosynthesis protein ThiC	* Rhodospirillum centenum SW Site: position = -194 score = 51.5 sequence = CTGGTTTCCAGGGGT... Gene: RC1_3970: Thiamin biosynthesis protein ThiC	* Gluconacetobacter diazotrophicus PAl 5 Site: position = -177 score = 66.29 sequence = GTCGCGTTCTCCGGG... Gene: Gdia_1390: Thiamin biosynthesis protein ThiC	* Acetobacter pasteurianus IFO 3283-01 Site: position = -183 score = 34.58 sequence = TCGTTCGGGCACCGT... Gene: APA01_25230: Thiamin biosynthesis protein ThiC	* Gluconobacter oxydans 621H Site: position = -269 score = 54.37 sequence = CGGCTCGTCAGGGGG... Gene: GOX2225: Thiamin biosynthesis protein ThiC	* Granulibacter bethesdensis CGDNIH1 Site: position = -197 score = 51.26 sequence = CAGCATCCGAGGGGG... Gene: GbCGDNIH1_0108: Thiamin biosynthesis protein ThiC	Thiamin biosynthesis protein ThiC
thiO	Rhodospirillum rubrum ATCC 11170	2 Magnetospirillum magnetotacticum MS-1* Site: position = -201 score = 58.28 sequence = GACGTTCCAGGGAGA... Gene: Magn03003992: Glycine oxidase ThiO (EC 1.4.3.19) Gene: Magn03006520: Glycine oxidase ThiO (EC 1.4.3.19)	Magnetospirillum magneticum AMB-1	* Azospirillum sp. B510 Site: position = -90 score = 50.88 sequence = TCATAGGCCTGGGGT... Gene: AZL_004520: Glycine oxidase ThiO (EC 1.4.3.19)	* Rhodospirillum centenum SW Site: position = -106 score = 53.06 sequence = GTCGTCAAACCCGGG... Gene: RC1_3102: Glycine oxidase ThiO (EC 1.4.3.19)	Gluconacetobacter diazotrophicus PAl 5 Gene: Gdia_0009: Glycine oxidase ThiO (EC 1.4.3.19)	Acetobacter pasteurianus IFO 3283-01 Gene: APA01_11000: Glycine oxidase ThiO (EC 1.4.3.19)	Gluconobacter oxydans 621H Gene: GOX2226: Glycine oxidase ThiO (EC 1.4.3.19)	Granulibacter bethesdensis CGDNIH1	Glycine oxidase ThiO (EC 1.4.3.19)
thiG	Rhodospirillum rubrum ATCC 11170 Gene: Rru_A2432: Thiazole biosynthesis protein ThiG	2 Magnetospirillum magnetotacticum MS-1 Gene: Magn03006940: Thiazole biosynthesis protein ThiG Gene: Magn03006522: Thiazole biosynthesis protein ThiG	Magnetospirillum magneticum AMB-1 Gene: amb2702: Thiazole biosynthesis protein ThiG	Azospirillum sp. B510 Gene: AZL_004540: Thiazole biosynthesis protein ThiG	Rhodospirillum centenum SW Gene: RC1_3100: Thiazole biosynthesis protein ThiG	Gluconacetobacter diazotrophicus PAl 5 Gene: Gdia_0011: Thiazole biosynthesis protein ThiG	Acetobacter pasteurianus IFO 3283-01 Gene: APA01_11020: Thiazole biosynthesis protein ThiG	Gluconobacter oxydans 621H Gene: GOX2227: Thiazole biosynthesis protein ThiG	Granulibacter bethesdensis CGDNIH1 Gene: GbCGDNIH1_1960: Thiazole biosynthesis protein ThiG	Thiazole biosynthesis protein ThiG
thiE	Rhodospirillum rubrum ATCC 11170	Magnetospirillum magnetotacticum MS-1 Gene: Magn03006523: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Magnetospirillum magneticum AMB-1	Azospirillum sp. B510	Rhodospirillum centenum SW	Gluconacetobacter diazotrophicus PAl 5 Gene: Gdia_0012: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Acetobacter pasteurianus IFO 3283-01 Gene: APA01_11030: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	2 Gluconobacter oxydans 621H Gene: GOX2228: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Gene: GOX0009: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Granulibacter bethesdensis CGDNIH1	Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
thiF	Rhodospirillum rubrum ATCC 11170	Magnetospirillum magnetotacticum MS-1	Magnetospirillum magneticum AMB-1	Azospirillum sp. B510	Rhodospirillum centenum SW	Gluconacetobacter diazotrophicus PAl 5	Acetobacter pasteurianus IFO 3283-01	Gluconobacter oxydans 621H Gene: GOX2229: Sulfur carrier protein adenylyltransferase	Granulibacter bethesdensis CGDNIH1	Sulfur carrier protein adenylyltransferase
thiD	Rhodospirillum rubrum ATCC 11170	Magnetospirillum magnetotacticum MS-1	Magnetospirillum magneticum AMB-1	Azospirillum sp. B510	Rhodospirillum centenum SW	Gluconacetobacter diazotrophicus PAl 5	* Acetobacter pasteurianus IFO 3283-01 Site: position = -150 score = 70.03 sequence = GCCTTACCGAGGGGA... Gene: APA01_13250: Phosphomethylpyrimidine kinase ThiD (EC 2.7.4.7)	Gluconobacter oxydans 621H Gene: GOX2230: Phosphomethylpyrimidine kinase ThiD (EC 2.7.4.7)	Granulibacter bethesdensis CGDNIH1	Phosphomethylpyrimidine kinase ThiD (EC 2.7.4.7)
thiS	Rhodospirillum rubrum ATCC 11170	Magnetospirillum magnetotacticum MS-1 Gene: Magn03006521: Sulfur carrier protein ThiS	Magnetospirillum magneticum AMB-1	Azospirillum sp. B510 Gene: AZL_004530: Sulfur carrier protein ThiS	Rhodospirillum centenum SW Gene: RC1_3101: Sulfur carrier protein ThiS	Gluconacetobacter diazotrophicus PAl 5 Gene: Gdia_0010: Sulfur carrier protein ThiS	Acetobacter pasteurianus IFO 3283-01 Gene: APA01_11010: Sulfur carrier protein ThiS	Gluconobacter oxydans 621H	Granulibacter bethesdensis CGDNIH1	Sulfur carrier protein ThiS

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog TPP - Rhodospirillales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --