Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog TPP - Rhodospirillales

Properties
Regulator type: RNA regulatory element
Name: TPP
RFAM: RF00059
Regulation mode:
Biological process: Thiamine biosynthesis
Effector: Thiamine pyrophosphate
Phylum: Proteobacteria/Alpha
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Rhodospirillum rubrum ATCC 11170 1 1
Magnetospirillum magnetotacticum MS-1 2 2
Magnetospirillum magneticum AMB-1 1 1
Azospirillum sp. B510 7 3
Rhodospirillum centenum SW 4 2
Gluconacetobacter diazotrophicus PAl 5 1 1
Acetobacter pasteurianus IFO 3283-01 2 2
Gluconobacter oxydans 621H 9 2
Granulibacter bethesdensis CGDNIH1 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
thiZ
 
Rhodospirillum rubrum ATCC 11170

Gene: Rru_A1644: Hydroxymethylpyrimidine ABC transporter, ATPase component
 
Magnetospirillum magnetotacticum MS-1
 
Magnetospirillum magneticum AMB-1
*
Azospirillum sp. B510

Site:
position = -147
score = 64.01
sequence = CCTTCACTGGGGGGA...

Gene: AZL_014930: Hydroxymethylpyrimidine ABC transporter, ATPase component
 
Rhodospirillum centenum SW
 
Gluconacetobacter diazotrophicus PAl 5

Gene: Gdia_3268: Hydroxymethylpyrimidine ABC transporter, ATPase component
 
Acetobacter pasteurianus IFO 3283-01
 
Gluconobacter oxydans 621H
 
Granulibacter bethesdensis CGDNIH1
Hydroxymethylpyrimidine ABC transporter, ATPase component
thiX
 
Rhodospirillum rubrum ATCC 11170

Gene: Rru_A1643: Hydroxymethylpyrimidine ABC transporter, transmembrane component
 
Magnetospirillum magnetotacticum MS-1
 
Magnetospirillum magneticum AMB-1
 
Azospirillum sp. B510

Gene: AZL_014940: Hydroxymethylpyrimidine ABC transporter, transmembrane component
 
Rhodospirillum centenum SW
 
Gluconacetobacter diazotrophicus PAl 5

Gene: Gdia_3269: Hydroxymethylpyrimidine ABC transporter, transmembrane component
 
Acetobacter pasteurianus IFO 3283-01
 
Gluconobacter oxydans 621H
 
Granulibacter bethesdensis CGDNIH1
Hydroxymethylpyrimidine ABC transporter, transmembrane component
thiY
 
Rhodospirillum rubrum ATCC 11170

Gene: Rru_A1642: Hydroxymethylpyrimidine ABC transporter, substrate-binding component
 
Magnetospirillum magnetotacticum MS-1
 
Magnetospirillum magneticum AMB-1
 
Azospirillum sp. B510

Gene: AZL_014950: Hydroxymethylpyrimidine ABC transporter, substrate-binding component
 
Rhodospirillum centenum SW
 
Gluconacetobacter diazotrophicus PAl 5

Gene: Gdia_1887: Hydroxymethylpyrimidine ABC transporter, substrate-binding component
 
Acetobacter pasteurianus IFO 3283-01
 
Gluconobacter oxydans 621H
 
Granulibacter bethesdensis CGDNIH1
Hydroxymethylpyrimidine ABC transporter, substrate-binding component
 
CRON 2.
omp_thi
 
Rhodospirillum rubrum ATCC 11170
 
Magnetospirillum magnetotacticum MS-1
 
Magnetospirillum magneticum AMB-1
 
Azospirillum sp. B510
 
Rhodospirillum centenum SW
 
Gluconacetobacter diazotrophicus PAl 5

Gene: Gdia_0913: Predicted thiamin-specific outer membrane transporter, TonB-dependent
 
Acetobacter pasteurianus IFO 3283-01

Gene: APA01_05460: Predicted thiamin-specific outer membrane transporter, TonB-dependent
*
Gluconobacter oxydans 621H

Site:
position = -223
score = 63.14
sequence = ACGCTTCACCGTGGG...

Gene: GOX1347: Predicted thiamin-specific outer membrane transporter, TonB-dependent
 
Granulibacter bethesdensis CGDNIH1
Predicted thiamin-specific outer membrane transporter, TonB-dependent
thiK
 
Rhodospirillum rubrum ATCC 11170
 
Magnetospirillum magnetotacticum MS-1
 
Magnetospirillum magneticum AMB-1
 
Azospirillum sp. B510
 
Rhodospirillum centenum SW
 
Gluconacetobacter diazotrophicus PAl 5
 
Acetobacter pasteurianus IFO 3283-01

Gene: APA01_05470: predicted thiamine kinase, aminoglycoside phosphotransferase family
 
Gluconobacter oxydans 621H

Gene: GOX1346: predicted thiamine kinase, aminoglycoside phosphotransferase family
 
Granulibacter bethesdensis CGDNIH1
predicted thiamine kinase, aminoglycoside phosphotransferase family
pnuT
 
Rhodospirillum rubrum ATCC 11170
 
Magnetospirillum magnetotacticum MS-1
 
Magnetospirillum magneticum AMB-1
 
Azospirillum sp. B510
 
Rhodospirillum centenum SW
 
Gluconacetobacter diazotrophicus PAl 5
 
Acetobacter pasteurianus IFO 3283-01

Gene: APA01_05480: Predicted thiamin transporter PnuT
 
Gluconobacter oxydans 621H

Gene: GOX1345: Predicted thiamin transporter PnuT
 
Granulibacter bethesdensis CGDNIH1
Predicted thiamin transporter PnuT
 
CRON 3.
thiC
*
Rhodospirillum rubrum ATCC 11170

Site:
position = -205
score = 56.43
sequence = ACCTGTTCCAGGGGG...

Gene: Rru_A2008: Thiamin biosynthesis protein ThiC
*3
Magnetospirillum magnetotacticum MS-1

Site:
position = -169
score = 75.16
sequence = CATCTTTCCGAAGGG...

Gene: Magn03010971: Thiamin biosynthesis protein ThiC

Gene: Magn03001752: Thiamin biosynthesis protein ThiC

Gene: Magn03002735: Thiamin biosynthesis protein ThiC
*
Magnetospirillum magneticum AMB-1

Site:
position = -63
score = 73.85
sequence = CATCTTTCCGAAGGG...

Gene: amb0221: Thiamin biosynthesis protein ThiC
*
Azospirillum sp. B510

Site:
position = -260
score = 54.35
sequence = TCCAGGGGGGTCCCG...

Gene: AZL_005290: Thiamin biosynthesis protein ThiC
*
Rhodospirillum centenum SW

Site:
position = -194
score = 51.5
sequence = CTGGTTTCCAGGGGT...

Gene: RC1_3970: Thiamin biosynthesis protein ThiC
*
Gluconacetobacter diazotrophicus PAl 5

Site:
position = -177
score = 66.29
sequence = GTCGCGTTCTCCGGG...

Gene: Gdia_1390: Thiamin biosynthesis protein ThiC
*
Acetobacter pasteurianus IFO 3283-01

Site:
position = -183
score = 34.58
sequence = TCGTTCGGGCACCGT...

Gene: APA01_25230: Thiamin biosynthesis protein ThiC
*
Gluconobacter oxydans 621H

Site:
position = -269
score = 54.37
sequence = CGGCTCGTCAGGGGG...

Gene: GOX2225: Thiamin biosynthesis protein ThiC
*
Granulibacter bethesdensis CGDNIH1

Site:
position = -197
score = 51.26
sequence = CAGCATCCGAGGGGG...

Gene: GbCGDNIH1_0108: Thiamin biosynthesis protein ThiC
Thiamin biosynthesis protein ThiC
thiO
 
Rhodospirillum rubrum ATCC 11170
*2
Magnetospirillum magnetotacticum MS-1

Site:
position = -201
score = 58.28
sequence = GACGTTCCAGGGAGA...

Gene: Magn03003992: Glycine oxidase ThiO (EC 1.4.3.19)

Gene: Magn03006520: Glycine oxidase ThiO (EC 1.4.3.19)
 
Magnetospirillum magneticum AMB-1
*
Azospirillum sp. B510

Site:
position = -90
score = 50.88
sequence = TCATAGGCCTGGGGT...

Gene: AZL_004520: Glycine oxidase ThiO (EC 1.4.3.19)
*
Rhodospirillum centenum SW

Site:
position = -106
score = 53.06
sequence = GTCGTCAAACCCGGG...

Gene: RC1_3102: Glycine oxidase ThiO (EC 1.4.3.19)
 
Gluconacetobacter diazotrophicus PAl 5

Gene: Gdia_0009: Glycine oxidase ThiO (EC 1.4.3.19)
 
Acetobacter pasteurianus IFO 3283-01

Gene: APA01_11000: Glycine oxidase ThiO (EC 1.4.3.19)
 
Gluconobacter oxydans 621H

Gene: GOX2226: Glycine oxidase ThiO (EC 1.4.3.19)
 
Granulibacter bethesdensis CGDNIH1
Glycine oxidase ThiO (EC 1.4.3.19)
thiG
 
Rhodospirillum rubrum ATCC 11170

Gene: Rru_A2432: Thiazole biosynthesis protein ThiG
 2
Magnetospirillum magnetotacticum MS-1

Gene: Magn03006940: Thiazole biosynthesis protein ThiG

Gene: Magn03006522: Thiazole biosynthesis protein ThiG
 
Magnetospirillum magneticum AMB-1

Gene: amb2702: Thiazole biosynthesis protein ThiG
 
Azospirillum sp. B510

Gene: AZL_004540: Thiazole biosynthesis protein ThiG
 
Rhodospirillum centenum SW

Gene: RC1_3100: Thiazole biosynthesis protein ThiG
 
Gluconacetobacter diazotrophicus PAl 5

Gene: Gdia_0011: Thiazole biosynthesis protein ThiG
 
Acetobacter pasteurianus IFO 3283-01

Gene: APA01_11020: Thiazole biosynthesis protein ThiG
 
Gluconobacter oxydans 621H

Gene: GOX2227: Thiazole biosynthesis protein ThiG
 
Granulibacter bethesdensis CGDNIH1

Gene: GbCGDNIH1_1960: Thiazole biosynthesis protein ThiG
Thiazole biosynthesis protein ThiG
thiE
 
Rhodospirillum rubrum ATCC 11170
 
Magnetospirillum magnetotacticum MS-1

Gene: Magn03006523: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Magnetospirillum magneticum AMB-1
 
Azospirillum sp. B510
 
Rhodospirillum centenum SW
 
Gluconacetobacter diazotrophicus PAl 5

Gene: Gdia_0012: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Acetobacter pasteurianus IFO 3283-01

Gene: APA01_11030: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 2
Gluconobacter oxydans 621H

Gene: GOX2228: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)

Gene: GOX0009: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Granulibacter bethesdensis CGDNIH1
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
thiF
 
Rhodospirillum rubrum ATCC 11170
 
Magnetospirillum magnetotacticum MS-1
 
Magnetospirillum magneticum AMB-1
 
Azospirillum sp. B510
 
Rhodospirillum centenum SW
 
Gluconacetobacter diazotrophicus PAl 5
 
Acetobacter pasteurianus IFO 3283-01
 
Gluconobacter oxydans 621H

Gene: GOX2229: Sulfur carrier protein adenylyltransferase
 
Granulibacter bethesdensis CGDNIH1
Sulfur carrier protein adenylyltransferase
thiD
 
Rhodospirillum rubrum ATCC 11170
 
Magnetospirillum magnetotacticum MS-1
 
Magnetospirillum magneticum AMB-1
 
Azospirillum sp. B510
 
Rhodospirillum centenum SW
 
Gluconacetobacter diazotrophicus PAl 5
*
Acetobacter pasteurianus IFO 3283-01

Site:
position = -150
score = 70.03
sequence = GCCTTACCGAGGGGA...

Gene: APA01_13250: Phosphomethylpyrimidine kinase ThiD (EC 2.7.4.7)
 
Gluconobacter oxydans 621H

Gene: GOX2230: Phosphomethylpyrimidine kinase ThiD (EC 2.7.4.7)
 
Granulibacter bethesdensis CGDNIH1
Phosphomethylpyrimidine kinase ThiD (EC 2.7.4.7)
thiS
 
Rhodospirillum rubrum ATCC 11170
 
Magnetospirillum magnetotacticum MS-1

Gene: Magn03006521: Sulfur carrier protein ThiS
 
Magnetospirillum magneticum AMB-1
 
Azospirillum sp. B510

Gene: AZL_004530: Sulfur carrier protein ThiS
 
Rhodospirillum centenum SW

Gene: RC1_3101: Sulfur carrier protein ThiS
 
Gluconacetobacter diazotrophicus PAl 5

Gene: Gdia_0010: Sulfur carrier protein ThiS
 
Acetobacter pasteurianus IFO 3283-01

Gene: APA01_11010: Sulfur carrier protein ThiS
 
Gluconobacter oxydans 621H
 
Granulibacter bethesdensis CGDNIH1
Sulfur carrier protein ThiS
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD