Regulog TPP - Rhodospirillales
| Regulator type: | RNA regulatory element |
| Name: | TPP |
| RFAM: | RF00059 |
| Regulation mode: | |
| Biological process: | Thiamine biosynthesis |
| Effector: | Thiamine pyrophosphate |
| Phylum: | Proteobacteria/Alpha |
Member of regulog collections
- By taxonomy - Rhodospirillales
- By RNA motif - TPP
- By effector - Thiamine pyrophosphate
- By pathway - Thiamine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Rhodospirillum rubrum ATCC 11170 | 1 | 1 |
| Magnetospirillum magnetotacticum MS-1 | 2 | 2 |
| Magnetospirillum magneticum AMB-1 | 1 | 1 |
| Azospirillum sp. B510 | 7 | 3 |
| Rhodospirillum centenum SW | 4 | 2 |
| Gluconacetobacter diazotrophicus PAl 5 | 1 | 1 |
| Acetobacter pasteurianus IFO 3283-01 | 2 | 2 |
| Gluconobacter oxydans 621H | 9 | 2 |
| Granulibacter bethesdensis CGDNIH1 | 1 | 1 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| thiZ |
Gene: Rru_A1644: Hydroxymethylpyrimidine ABC transporter, ATPase component |
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|
*
Azospirillum sp. B510 Site: position = -147 score = 64.01 sequence = CCTTCACTGGGGGGA... Gene: AZL_014930: Hydroxymethylpyrimidine ABC transporter, ATPase component |
|
Gene: Gdia_3268: Hydroxymethylpyrimidine ABC transporter, ATPase component |
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Hydroxymethylpyrimidine ABC transporter, ATPase component |
| thiX |
Gene: Rru_A1643: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
|
|
Gene: AZL_014940: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
|
Gene: Gdia_3269: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
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|
|
Hydroxymethylpyrimidine ABC transporter, transmembrane component |
| thiY |
Gene: Rru_A1642: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
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|
Gene: AZL_014950: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
|
Gene: Gdia_1887: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
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|
|
Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
| CRON 2. | ||||||||||
| omp_thi |
|
|
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|
Gene: Gdia_0913: Predicted thiamin-specific outer membrane transporter, TonB-dependent |
Gene: APA01_05460: Predicted thiamin-specific outer membrane transporter, TonB-dependent |
*
Gluconobacter oxydans 621H Site: position = -223 score = 63.14 sequence = ACGCTTCACCGTGGG... Gene: GOX1347: Predicted thiamin-specific outer membrane transporter, TonB-dependent |
|
Predicted thiamin-specific outer membrane transporter, TonB-dependent |
| thiK |
|
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|
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|
Gene: APA01_05470: predicted thiamine kinase, aminoglycoside phosphotransferase family |
Gene: GOX1346: predicted thiamine kinase, aminoglycoside phosphotransferase family |
|
predicted thiamine kinase, aminoglycoside phosphotransferase family |
| pnuT |
|
|
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Gene: APA01_05480: Predicted thiamin transporter PnuT |
Gene: GOX1345: Predicted thiamin transporter PnuT |
|
Predicted thiamin transporter PnuT |
| CRON 3. | ||||||||||
| thiC |
*
Rhodospirillum rubrum ATCC 11170 Site: position = -205 score = 56.43 sequence = ACCTGTTCCAGGGGG... Gene: Rru_A2008: Thiamin biosynthesis protein ThiC |
*3
Magnetospirillum magnetotacticum MS-1 Site: position = -169 score = 75.16 sequence = CATCTTTCCGAAGGG... Gene: Magn03010971: Thiamin biosynthesis protein ThiC Gene: Magn03001752: Thiamin biosynthesis protein ThiC Gene: Magn03002735: Thiamin biosynthesis protein ThiC |
*
Magnetospirillum magneticum AMB-1 Site: position = -63 score = 73.85 sequence = CATCTTTCCGAAGGG... Gene: amb0221: Thiamin biosynthesis protein ThiC |
*
Azospirillum sp. B510 Site: position = -260 score = 54.35 sequence = TCCAGGGGGGTCCCG... Gene: AZL_005290: Thiamin biosynthesis protein ThiC |
*
Rhodospirillum centenum SW Site: position = -194 score = 51.5 sequence = CTGGTTTCCAGGGGT... Gene: RC1_3970: Thiamin biosynthesis protein ThiC |
*
Gluconacetobacter diazotrophicus PAl 5 Site: position = -177 score = 66.29 sequence = GTCGCGTTCTCCGGG... Gene: Gdia_1390: Thiamin biosynthesis protein ThiC |
*
Acetobacter pasteurianus IFO 3283-01 Site: position = -183 score = 34.58 sequence = TCGTTCGGGCACCGT... Gene: APA01_25230: Thiamin biosynthesis protein ThiC |
*
Gluconobacter oxydans 621H Site: position = -269 score = 54.37 sequence = CGGCTCGTCAGGGGG... Gene: GOX2225: Thiamin biosynthesis protein ThiC |
*
Granulibacter bethesdensis CGDNIH1 Site: position = -197 score = 51.26 sequence = CAGCATCCGAGGGGG... Gene: GbCGDNIH1_0108: Thiamin biosynthesis protein ThiC |
Thiamin biosynthesis protein ThiC |
| thiO |
|
*2
Magnetospirillum magnetotacticum MS-1 Site: position = -201 score = 58.28 sequence = GACGTTCCAGGGAGA... Gene: Magn03003992: Glycine oxidase ThiO (EC 1.4.3.19) Gene: Magn03006520: Glycine oxidase ThiO (EC 1.4.3.19) |
|
*
Azospirillum sp. B510 Site: position = -90 score = 50.88 sequence = TCATAGGCCTGGGGT... Gene: AZL_004520: Glycine oxidase ThiO (EC 1.4.3.19) |
*
Rhodospirillum centenum SW Site: position = -106 score = 53.06 sequence = GTCGTCAAACCCGGG... Gene: RC1_3102: Glycine oxidase ThiO (EC 1.4.3.19) |
Gene: Gdia_0009: Glycine oxidase ThiO (EC 1.4.3.19) |
Gene: APA01_11000: Glycine oxidase ThiO (EC 1.4.3.19) |
Gene: GOX2226: Glycine oxidase ThiO (EC 1.4.3.19) |
|
Glycine oxidase ThiO (EC 1.4.3.19) |
| thiG |
Gene: Rru_A2432: Thiazole biosynthesis protein ThiG |
2
Magnetospirillum magnetotacticum MS-1 Gene: Magn03006940: Thiazole biosynthesis protein ThiG Gene: Magn03006522: Thiazole biosynthesis protein ThiG |
Gene: amb2702: Thiazole biosynthesis protein ThiG |
Gene: AZL_004540: Thiazole biosynthesis protein ThiG |
Gene: RC1_3100: Thiazole biosynthesis protein ThiG |
Gene: Gdia_0011: Thiazole biosynthesis protein ThiG |
Gene: APA01_11020: Thiazole biosynthesis protein ThiG |
Gene: GOX2227: Thiazole biosynthesis protein ThiG |
Gene: GbCGDNIH1_1960: Thiazole biosynthesis protein ThiG |
Thiazole biosynthesis protein ThiG |
| thiE |
|
Gene: Magn03006523: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
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Gene: Gdia_0012: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: APA01_11030: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
2
Gluconobacter oxydans 621H Gene: GOX2228: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) Gene: GOX0009: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
|
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
| thiF |
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Gene: GOX2229: Sulfur carrier protein adenylyltransferase |
|
Sulfur carrier protein adenylyltransferase |
| thiD |
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*
Acetobacter pasteurianus IFO 3283-01 Site: position = -150 score = 70.03 sequence = GCCTTACCGAGGGGA... Gene: APA01_13250: Phosphomethylpyrimidine kinase ThiD (EC 2.7.4.7) |
Gene: GOX2230: Phosphomethylpyrimidine kinase ThiD (EC 2.7.4.7) |
|
Phosphomethylpyrimidine kinase ThiD (EC 2.7.4.7) |
| thiS |
|
Gene: Magn03006521: Sulfur carrier protein ThiS |
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Gene: AZL_004530: Sulfur carrier protein ThiS |
Gene: RC1_3101: Sulfur carrier protein ThiS |
Gene: Gdia_0010: Sulfur carrier protein ThiS |
Gene: APA01_11010: Sulfur carrier protein ThiS |
|
|
Sulfur carrier protein ThiS |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |