Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog FMN - Rhodospirillales

Properties
Regulator type: RNA regulatory element
Name: FMN
RFAM: RF00050
Regulation mode:
Biological process: Riboflavin biosynthesis
Effector: Flavin mononucleotide
Phylum: Proteobacteria/Alpha
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Rhodospirillum rubrum ATCC 11170 1 1
Magnetospirillum magnetotacticum MS-1
Magnetospirillum magneticum AMB-1
Azospirillum sp. B510
Rhodospirillum centenum SW
Gluconacetobacter diazotrophicus PAl 5 4 1
Acetobacter pasteurianus IFO 3283-01 4 1
Gluconobacter oxydans 621H 4 1
Granulibacter bethesdensis CGDNIH1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ribD
 
Rhodospirillum rubrum ATCC 11170

Gene: Rru_A1825: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
 3
Magnetospirillum magnetotacticum MS-1

Gene: Magn03004372: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)

Gene: Magn03003968: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)

Gene: Magn03009108: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
 
Magnetospirillum magneticum AMB-1

Gene: amb2341: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
 
Azospirillum sp. B510

Gene: AZL_010180: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
 
Rhodospirillum centenum SW

Gene: RC1_1340: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
*
Gluconacetobacter diazotrophicus PAl 5

Site:
position = -319
score = 97.74
sequence = TTGACGTTCTCGGGG...

Gene: Gdia_1867: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
*
Acetobacter pasteurianus IFO 3283-01

Site:
position = -247
score = 120.43
sequence = GTGATGTTCTCAGGG...

Gene: APA01_18580: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
*
Gluconobacter oxydans 621H

Site:
position = -274
score = 113.09
sequence = GACGTTCTCAGGGCG...

Gene: GOX0978: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
 
Granulibacter bethesdensis CGDNIH1
Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193)
ribE
 
Rhodospirillum rubrum ATCC 11170

Gene: Rru_A1824: Riboflavin synthase alpha chain (EC 2.5.1.9)
 3
Magnetospirillum magnetotacticum MS-1

Gene: Magn03004371: Riboflavin synthase alpha chain (EC 2.5.1.9)

Gene: Magn03003352: Riboflavin synthase alpha chain (EC 2.5.1.9)

Gene: Magn03009109: Riboflavin synthase alpha chain (EC 2.5.1.9)
 2
Magnetospirillum magneticum AMB-1

Gene: amb2342: Riboflavin synthase alpha chain (EC 2.5.1.9)

Gene: amb2343: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Azospirillum sp. B510

Gene: AZL_010170: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Rhodospirillum centenum SW

Gene: RC1_1339: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Gluconacetobacter diazotrophicus PAl 5

Gene: Gdia_1866: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Acetobacter pasteurianus IFO 3283-01

Gene: APA01_18570: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Gluconobacter oxydans 621H

Gene: GOX0979: Riboflavin synthase alpha chain (EC 2.5.1.9)
 
Granulibacter bethesdensis CGDNIH1

Gene: GbCGDNIH1_1006: Riboflavin synthase alpha chain (EC 2.5.1.9)
Riboflavin synthase alpha chain (EC 2.5.1.9)
ribBA
 
Rhodospirillum rubrum ATCC 11170

Gene: Rru_A1823: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II
 2
Magnetospirillum magnetotacticum MS-1

Gene: Magn03009110: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II

Gene: Magn03009111: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II
 
Magnetospirillum magneticum AMB-1

Gene: amb2344: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II
 
Azospirillum sp. B510

Gene: AZL_010160: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II
 
Rhodospirillum centenum SW

Gene: RC1_1338: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II
 
Gluconacetobacter diazotrophicus PAl 5

Gene: Gdia_1865: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II
 
Acetobacter pasteurianus IFO 3283-01

Gene: APA01_18560: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II
 
Gluconobacter oxydans 621H

Gene: GOX0980: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II
 
Granulibacter bethesdensis CGDNIH1

Gene: GbCGDNIH1_1005: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II
3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II
ribH
 
Rhodospirillum rubrum ATCC 11170

Gene: Rru_A1822: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 2
Magnetospirillum magnetotacticum MS-1

Gene: Magn03007010: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)

Gene: Magn03009112: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Magnetospirillum magneticum AMB-1

Gene: amb2345: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 2
Azospirillum sp. B510

Gene: AZL_010150: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)

Gene: AZL_a02190: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Rhodospirillum centenum SW

Gene: RC1_1337: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Gluconacetobacter diazotrophicus PAl 5

Gene: Gdia_1864: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Acetobacter pasteurianus IFO 3283-01

Gene: APA01_18550: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Gluconobacter oxydans 621H

Gene: GOX0981: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
Granulibacter bethesdensis CGDNIH1

Gene: GbCGDNIH1_1004: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9)
 
CRON 2.
ribB
*
Rhodospirillum rubrum ATCC 11170

Site:
position = -304
score = 110.13
sequence = CTTGTTCTCAGGGCA...

Gene: Rru_A2197: 3,4-dihydroxy-2-butanone 4-phosphate synthase
 
Magnetospirillum magnetotacticum MS-1
 
Magnetospirillum magneticum AMB-1
 
Azospirillum sp. B510
 
Rhodospirillum centenum SW
 
Gluconacetobacter diazotrophicus PAl 5
 
Acetobacter pasteurianus IFO 3283-01
 
Gluconobacter oxydans 621H
 
Granulibacter bethesdensis CGDNIH1
3,4-dihydroxy-2-butanone 4-phosphate synthase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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