Regulog TPP - Alteromonadales

Properties
Regulator type:	RNA regulatory element
Name:	TPP
RFAM:	RF00059
Regulation mode:
Biological process:
Effector:
Phylum:	Proteobacteria/Gamma

Member of regulog collections

By taxonomy - Alteromonadales
By RNA motif - TPP

Statistics of regulated genes
Genome	Genes	Operons
Pseudoalteromonas atlantica T6c	10	2
Alteromonas macleodii 'Deep ecotype'	10	2
Glaciecola sp. HTCC2999	1	1
Colwellia psychrerythraea 34H	8	2
Alteromonadales bacterium TW-7	6	1
Pseudoalteromonas haloplanktis TAC125	6	1
Pseudoalteromonas tunicata D2	6	1
Idiomarina baltica OS145	4	1
Idiomarina loihiensis L2TR	10	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes										Function

CRON 1.
thiC	* Pseudoalteromonas atlantica T6c Site: position = -155 score = 69.48 sequence = ACTCGCTCTCGGGGC... Gene: Patl_1931: Thiamin biosynthesis protein ThiC	* Alteromonas macleodii 'Deep ecotype' Site: position = -361 score = 77.21 sequence = AAATTACTTGTCGGA... Gene: MADE_00146: Thiamin biosynthesis protein ThiC	Glaciecola sp. HTCC2999	* Colwellia psychrerythraea 34H Site: position = -236 score = 69.39 sequence = AACACTTGTCGGAGT... Gene: CPS_0250: Thiamin biosynthesis protein ThiC	* Alteromonadales bacterium TW-7 Site: position = -252 score = 74.91 sequence = TATACTTGTCGGAGT... Gene: ATW7_18600: Thiamin biosynthesis protein ThiC	* Pseudoalteromonas haloplanktis TAC125 Site: position = -284 score = 72.58 sequence = AATACTTGTCGGAGT... Gene: PSHAa0480: Thiamin biosynthesis protein ThiC	* Pseudoalteromonas tunicata D2 Site: position = -263 score = 58.93 sequence = GTTACTTGTCGGAGT... Gene: PTD2_07759: Thiamin biosynthesis protein ThiC	Idiomarina baltica OS145	* Idiomarina loihiensis L2TR Site: position = -201 score = 83.43 sequence = GAATCTTGTCGGAGT... Gene: IL0765: Thiamin biosynthesis protein ThiC	Thiamin biosynthesis protein ThiC
thiDE	Pseudoalteromonas atlantica T6c Gene: Patl_1935: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Alteromonas macleodii 'Deep ecotype' Gene: MADE_00145: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7 Gene: ATW7_18620: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa0484: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Pseudoalteromonas tunicata D2 Gene: PTD2_07779: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Idiomarina baltica OS145	Idiomarina loihiensis L2TR Gene: IL0766: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)	Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
thiF	Pseudoalteromonas atlantica T6c Gene: Patl_1936: Sulfur carrier protein adenylyltransferase ThiF/Rhodanese-like	Alteromonas macleodii 'Deep ecotype' Gene: MADE_00144: Sulfur carrier protein adenylyltransferase ThiF	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7 Gene: ATW7_18625: Sulfur carrier protein adenylyltransferase ThiF	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa0485: Sulfur carrier protein adenylyltransferase ThiF	Pseudoalteromonas tunicata D2 Gene: PTD2_07784: Sulfur carrier protein adenylyltransferase ThiF	Idiomarina baltica OS145	Idiomarina loihiensis L2TR Gene: IL0767: Sulfur carrier protein adenylyltransferase ThiF	Sulfur carrier protein adenylyltransferase ThiF
thiS	Pseudoalteromonas atlantica T6c Gene: Patl_1933: Sulfur carrier protein ThiS	Alteromonas macleodii 'Deep ecotype' Gene: MADE_00143: Sulfur carrier protein ThiS	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H Gene: CPS_0252: Sulfur carrier protein ThiS	Alteromonadales bacterium TW-7 Gene: ATW7_18610: Sulfur carrier protein ThiS	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa0482: Sulfur carrier protein ThiS	Pseudoalteromonas tunicata D2 Gene: PTD2_07769: Sulfur carrier protein ThiS	Idiomarina baltica OS145	Idiomarina loihiensis L2TR Gene: IL0768: Sulfur carrier protein ThiS	Sulfur carrier protein ThiS
thiG	Pseudoalteromonas atlantica T6c Gene: Patl_1934: Thiazole biosynthesis protein ThiG	Alteromonas macleodii 'Deep ecotype' Gene: MADE_00142: Thiazole biosynthesis protein ThiG	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H Gene: CPS_0253: Thiazole biosynthesis protein ThiG	Alteromonadales bacterium TW-7 Gene: ATW7_18615: Thiazole biosynthesis protein ThiG	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa0483: Thiazole biosynthesis protein ThiG	Pseudoalteromonas tunicata D2 Gene: PTD2_07774: Thiazole biosynthesis protein ThiG	Idiomarina baltica OS145	Idiomarina loihiensis L2TR Gene: IL0769: Thiazole biosynthesis protein ThiG	Thiazole biosynthesis protein ThiG
thiH	Pseudoalteromonas atlantica T6c	Alteromonas macleodii 'Deep ecotype' Gene: MADE_00141: 2-iminoacetate synthase (EC 1.3.99.n2)	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H	Alteromonadales bacterium TW-7	Pseudoalteromonas haloplanktis TAC125	Pseudoalteromonas tunicata D2	Idiomarina baltica OS145	Idiomarina loihiensis L2TR Gene: IL0770: 2-iminoacetate synthase (EC 1.3.99.n2)	2-iminoacetate synthase (EC 1.3.99.n2)
thiO	Pseudoalteromonas atlantica T6c Gene: Patl_1932: Glycine oxidase ThiO (EC 1.4.3.19)	Alteromonas macleodii 'Deep ecotype'	Glaciecola sp. HTCC2999	Colwellia psychrerythraea 34H Gene: CPS_0251: Glycine oxidase ThiO (EC 1.4.3.19)	Alteromonadales bacterium TW-7 Gene: ATW7_18605: Glycine oxidase ThiO (EC 1.4.3.19)	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa0481: Glycine oxidase ThiO (EC 1.4.3.19)	Pseudoalteromonas tunicata D2 Gene: PTD2_07764: Glycine oxidase ThiO (EC 1.4.3.19)	Idiomarina baltica OS145	Idiomarina loihiensis L2TR	Glycine oxidase ThiO (EC 1.4.3.19)

CRON 2.
omp_thi	* Pseudoalteromonas atlantica T6c Site: position = -178 score = 63.61 sequence = TAACTACCAAGGGGT... Gene: Patl_1344: predicted thiamin-specific outer membrane transporter, TonB-dependent	* Alteromonas macleodii 'Deep ecotype' Site: position = -160 score = 73.76 sequence = ACGCTATACCAAGGG... Gene: MADE_02805: predicted thiamin-specific outer membrane transporter, TonB-dependent	2 Glaciecola sp. HTCC2999* Site: position = -154 score = 61.03 sequence = CAGCGTCCAAGGGGT... Gene: GHTCC_010100011239: predicted thiamin-specific outer membrane transporter, TonB-dependent Gene: GHTCC_010100005192: predicted thiamin-specific outer membrane transporter, TonB-dependent	* Colwellia psychrerythraea 34H Site: position = -469 score = 22.93 sequence = GCGTTGAACCAAGGG... Gene: CPS_0067: predicted thiamin-specific outer membrane transporter, TonB-dependent	Alteromonadales bacterium TW-7 Gene: ATW7_18585: predicted thiamin-specific outer membrane transporter, TonB-dependent	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa0476: predicted thiamin-specific outer membrane transporter, TonB-dependent	Pseudoalteromonas tunicata D2 Gene: PTD2_07744: predicted thiamin-specific outer membrane transporter, TonB-dependent	* Idiomarina baltica OS145 Site: position = -184 score = 72.31 sequence = CCCGAGTACCAAGGG... Gene: OS145_08472: predicted thiamin-specific outer membrane transporter, TonB-dependent	* Idiomarina loihiensis L2TR Site: position = -149 score = 73.79 sequence = CCGCTTTACCAAGGG... Gene: IL2358: predicted thiamin-specific outer membrane transporter, TonB-dependent	predicted thiamin-specific outer membrane transporter, TonB-dependent
ykoF	Pseudoalteromonas atlantica T6c Gene: Patl_1345: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative	Alteromonas macleodii 'Deep ecotype' Gene: MADE_02804: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative	Glaciecola sp. HTCC2999 Gene: GHTCC_010100004498: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative	Colwellia psychrerythraea 34H Gene: CPS_0066: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative	Alteromonadales bacterium TW-7 Gene: ATW7_11415: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa2432: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative	Pseudoalteromonas tunicata D2 Gene: PTD2_07739: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative	Idiomarina baltica OS145 Gene: OS145_08467: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative	Idiomarina loihiensis L2TR Gene: IL2357: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative	Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative
pnuT	Pseudoalteromonas atlantica T6c Gene: Patl_1346: Predicted thiamin transporter PnuT	Alteromonas macleodii 'Deep ecotype' Gene: MADE_02803: Predicted thiamin transporter PnuT	Glaciecola sp. HTCC2999 Gene: GHTCC_010100005197: Predicted thiamin transporter PnuT	Colwellia psychrerythraea 34H Gene: CPS_0065: Predicted thiamin transporter PnuT	Alteromonadales bacterium TW-7 Gene: ATW7_11410: Predicted thiamin transporter PnuT	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa2431: Predicted thiamin transporter PnuT	Pseudoalteromonas tunicata D2 Gene: PTD2_07734: Predicted thiamin transporter PnuT	Idiomarina baltica OS145 Gene: OS145_08462: Predicted thiamin transporter PnuT	Idiomarina loihiensis L2TR Gene: IL2356: Predicted thiamin transporter PnuT	Predicted thiamin transporter PnuT
PF01636	Pseudoalteromonas atlantica T6c Gene: Patl_1347: Putative thiamine kinase, PnuT-associated, THI-regulated	Alteromonas macleodii 'Deep ecotype' Gene: MADE_02802: Putative thiamine kinase, PnuT-associated, THI-regulated	Glaciecola sp. HTCC2999 Gene: GHTCC_010100005202: Putative thiamine kinase, PnuT-associated, THI-regulated	Colwellia psychrerythraea 34H Gene: CPS_0064: Putative thiamine kinase, PnuT-associated, THI-regulated	Alteromonadales bacterium TW-7 Gene: ATW7_11405: Putative thiamine kinase, PnuT-associated, THI-regulated	Pseudoalteromonas haloplanktis TAC125 Gene: PSHAa2430: Putative thiamine kinase, PnuT-associated, THI-regulated	Pseudoalteromonas tunicata D2 Gene: PTD2_07729: Putative thiamine kinase, PnuT-associated, THI-regulated	Idiomarina baltica OS145 Gene: OS145_08457: Putative thiamine kinase, PnuT-associated, THI-regulated	Idiomarina loihiensis L2TR Gene: IL2355: Putative thiamine kinase, PnuT-associated, THI-regulated	Putative thiamine kinase, PnuT-associated, THI-regulated

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog TPP - Alteromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --