Regulog TPP - Alteromonadales
| Regulator type: | RNA regulatory element |
| Name: | TPP |
| RFAM: | RF00059 |
| Regulation mode: | |
| Biological process: | |
| Effector: | |
| Phylum: | Proteobacteria/Gamma |
Member of regulog collections
- By taxonomy - Alteromonadales
- By RNA motif - TPP
| Genome | Genes | Operons |
|---|---|---|
| Pseudoalteromonas atlantica T6c | 10 | 2 |
| Alteromonas macleodii 'Deep ecotype' | 10 | 2 |
| Glaciecola sp. HTCC2999 | 1 | 1 |
| Colwellia psychrerythraea 34H | 8 | 2 |
| Alteromonadales bacterium TW-7 | 6 | 1 |
| Pseudoalteromonas haloplanktis TAC125 | 6 | 1 |
| Pseudoalteromonas tunicata D2 | 6 | 1 |
| Idiomarina baltica OS145 | 4 | 1 |
| Idiomarina loihiensis L2TR | 10 | 2 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| thiC |
*
Pseudoalteromonas atlantica T6c Site: position = -155 score = 69.48 sequence = ACTCGCTCTCGGGGC... Gene: Patl_1931: Thiamin biosynthesis protein ThiC |
*
Alteromonas macleodii 'Deep ecotype' Site: position = -361 score = 77.21 sequence = AAATTACTTGTCGGA... Gene: MADE_00146: Thiamin biosynthesis protein ThiC |
|
*
Colwellia psychrerythraea 34H Site: position = -236 score = 69.39 sequence = AACACTTGTCGGAGT... Gene: CPS_0250: Thiamin biosynthesis protein ThiC |
*
Alteromonadales bacterium TW-7 Site: position = -252 score = 74.91 sequence = TATACTTGTCGGAGT... Gene: ATW7_18600: Thiamin biosynthesis protein ThiC |
*
Pseudoalteromonas haloplanktis TAC125 Site: position = -284 score = 72.58 sequence = AATACTTGTCGGAGT... Gene: PSHAa0480: Thiamin biosynthesis protein ThiC |
*
Pseudoalteromonas tunicata D2 Site: position = -263 score = 58.93 sequence = GTTACTTGTCGGAGT... Gene: PTD2_07759: Thiamin biosynthesis protein ThiC |
|
*
Idiomarina loihiensis L2TR Site: position = -201 score = 83.43 sequence = GAATCTTGTCGGAGT... Gene: IL0765: Thiamin biosynthesis protein ThiC |
Thiamin biosynthesis protein ThiC |
| thiDE |
Gene: Patl_1935: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: MADE_00145: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
|
|
Gene: ATW7_18620: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: PSHAa0484: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: PTD2_07779: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
|
Gene: IL0766: Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Phosphomethylpyrimidine kinase (EC 2.7.4.7) / Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
| thiF |
Gene: Patl_1936: Sulfur carrier protein adenylyltransferase ThiF/Rhodanese-like |
Gene: MADE_00144: Sulfur carrier protein adenylyltransferase ThiF |
|
|
Gene: ATW7_18625: Sulfur carrier protein adenylyltransferase ThiF |
Gene: PSHAa0485: Sulfur carrier protein adenylyltransferase ThiF |
Gene: PTD2_07784: Sulfur carrier protein adenylyltransferase ThiF |
|
Gene: IL0767: Sulfur carrier protein adenylyltransferase ThiF |
Sulfur carrier protein adenylyltransferase ThiF |
| thiS |
Gene: Patl_1933: Sulfur carrier protein ThiS |
Gene: MADE_00143: Sulfur carrier protein ThiS |
|
Gene: CPS_0252: Sulfur carrier protein ThiS |
Gene: ATW7_18610: Sulfur carrier protein ThiS |
Gene: PSHAa0482: Sulfur carrier protein ThiS |
Gene: PTD2_07769: Sulfur carrier protein ThiS |
|
Gene: IL0768: Sulfur carrier protein ThiS |
Sulfur carrier protein ThiS |
| thiG |
Gene: Patl_1934: Thiazole biosynthesis protein ThiG |
Gene: MADE_00142: Thiazole biosynthesis protein ThiG |
|
Gene: CPS_0253: Thiazole biosynthesis protein ThiG |
Gene: ATW7_18615: Thiazole biosynthesis protein ThiG |
Gene: PSHAa0483: Thiazole biosynthesis protein ThiG |
Gene: PTD2_07774: Thiazole biosynthesis protein ThiG |
|
Gene: IL0769: Thiazole biosynthesis protein ThiG |
Thiazole biosynthesis protein ThiG |
| thiH |
|
Gene: MADE_00141: 2-iminoacetate synthase (EC 1.3.99.n2) |
|
|
|
|
|
|
Gene: IL0770: 2-iminoacetate synthase (EC 1.3.99.n2) |
2-iminoacetate synthase (EC 1.3.99.n2) |
| thiO |
Gene: Patl_1932: Glycine oxidase ThiO (EC 1.4.3.19) |
|
|
Gene: CPS_0251: Glycine oxidase ThiO (EC 1.4.3.19) |
Gene: ATW7_18605: Glycine oxidase ThiO (EC 1.4.3.19) |
Gene: PSHAa0481: Glycine oxidase ThiO (EC 1.4.3.19) |
Gene: PTD2_07764: Glycine oxidase ThiO (EC 1.4.3.19) |
|
|
Glycine oxidase ThiO (EC 1.4.3.19) |
| CRON 2. | ||||||||||
| omp_thi |
*
Pseudoalteromonas atlantica T6c Site: position = -178 score = 63.61 sequence = TAACTACCAAGGGGT... Gene: Patl_1344: predicted thiamin-specific outer membrane transporter, TonB-dependent |
*
Alteromonas macleodii 'Deep ecotype' Site: position = -160 score = 73.76 sequence = ACGCTATACCAAGGG... Gene: MADE_02805: predicted thiamin-specific outer membrane transporter, TonB-dependent |
*2
Glaciecola sp. HTCC2999 Site: position = -154 score = 61.03 sequence = CAGCGTCCAAGGGGT... Gene: GHTCC_010100011239: predicted thiamin-specific outer membrane transporter, TonB-dependent Gene: GHTCC_010100005192: predicted thiamin-specific outer membrane transporter, TonB-dependent |
*
Colwellia psychrerythraea 34H Site: position = -469 score = 22.93 sequence = GCGTTGAACCAAGGG... Gene: CPS_0067: predicted thiamin-specific outer membrane transporter, TonB-dependent |
Gene: ATW7_18585: predicted thiamin-specific outer membrane transporter, TonB-dependent |
Gene: PSHAa0476: predicted thiamin-specific outer membrane transporter, TonB-dependent |
Gene: PTD2_07744: predicted thiamin-specific outer membrane transporter, TonB-dependent |
*
Idiomarina baltica OS145 Site: position = -184 score = 72.31 sequence = CCCGAGTACCAAGGG... Gene: OS145_08472: predicted thiamin-specific outer membrane transporter, TonB-dependent |
*
Idiomarina loihiensis L2TR Site: position = -149 score = 73.79 sequence = CCGCTTTACCAAGGG... Gene: IL2358: predicted thiamin-specific outer membrane transporter, TonB-dependent |
predicted thiamin-specific outer membrane transporter, TonB-dependent |
| ykoF |
Gene: Patl_1345: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative |
Gene: MADE_02804: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative |
Gene: GHTCC_010100004498: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative |
Gene: CPS_0066: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative |
Gene: ATW7_11415: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative |
Gene: PSHAa2432: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative |
Gene: PTD2_07739: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative |
Gene: OS145_08467: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative |
Gene: IL2357: Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative |
Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative |
| pnuT |
Gene: Patl_1346: Predicted thiamin transporter PnuT |
Gene: MADE_02803: Predicted thiamin transporter PnuT |
Gene: GHTCC_010100005197: Predicted thiamin transporter PnuT |
Gene: CPS_0065: Predicted thiamin transporter PnuT |
Gene: ATW7_11410: Predicted thiamin transporter PnuT |
Gene: PSHAa2431: Predicted thiamin transporter PnuT |
Gene: PTD2_07734: Predicted thiamin transporter PnuT |
Gene: OS145_08462: Predicted thiamin transporter PnuT |
Gene: IL2356: Predicted thiamin transporter PnuT |
Predicted thiamin transporter PnuT |
| PF01636 |
Gene: Patl_1347: Putative thiamine kinase, PnuT-associated, THI-regulated |
Gene: MADE_02802: Putative thiamine kinase, PnuT-associated, THI-regulated |
Gene: GHTCC_010100005202: Putative thiamine kinase, PnuT-associated, THI-regulated |
Gene: CPS_0064: Putative thiamine kinase, PnuT-associated, THI-regulated |
Gene: ATW7_11405: Putative thiamine kinase, PnuT-associated, THI-regulated |
Gene: PSHAa2430: Putative thiamine kinase, PnuT-associated, THI-regulated |
Gene: PTD2_07729: Putative thiamine kinase, PnuT-associated, THI-regulated |
Gene: OS145_08457: Putative thiamine kinase, PnuT-associated, THI-regulated |
Gene: IL2355: Putative thiamine kinase, PnuT-associated, THI-regulated |
Putative thiamine kinase, PnuT-associated, THI-regulated |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |