Regulog ArgR - Clostridia-1
| Regulator type: | Transcription factor |
| Regulator family: | ArgR |
| Regulation mode: | repressor |
| Biological process: | Arginine biosynthesis |
| Effector: | Arginine |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Clostridia-1
- By trascription factor - ArgR
- By TF family - ArgR
- By effector - Arginine
- By pathway - Arginine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Clostridium acetobutylicum ATCC 824 | 16 | 8 |
| Clostridium beijerincki NCIMB 8052 | 3 | 2 |
| Clostridium botulinum A str. ATCC 3502 | 7 | 3 |
| Clostridium butyricum 5521 | 5 | 3 |
| Clostridium kluyveri DSM 555 | 13 | 3 |
| Clostridium novyi NT | 15 | 6 |
| Clostridium perfringens ATCC 13124 | 6 | 3 |
| Clostridium tetani E88 | 7 | 2 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| artP2 |
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*2
Clostridium kluyveri DSM 555 Site: position = -222 score = 4.86438 sequence = ATGTATATGTATAAAT Site: position = -122 score = 4.59811 sequence = ATGTATAATTATAAGG Gene: CKL_2377: Arginine ABC transporter, substrate-binding protein Site: position = -88 score = 4.84682 sequence = TTGCATAATTATAATA Site: position = -68 score = 5.12392 sequence = ATGTATAATTATTTAT Gene: CKL_0978: Arginine ABC transporter, substrate-binding protein |
*
Clostridium novyi NT Site: position = -254 score = 5.09167 sequence = ATATATAATTATAAAA Site: position = -232 score = 4.52639 sequence = ATGTATAATAATACTG Site: position = -158 score = 4.80749 sequence = TTGTATATGTATAAAA Site: position = -138 score = 5.28929 sequence = TTGAATAAATATTCAT Site: position = -115 score = 4.84682 sequence = TTGCATAATTATAATA Site: position = -95 score = 5.12392 sequence = ATGTATAATTATTTAT Site: position = -10 score = 4.85953 sequence = GTGTATAAATATGAAA Gene: NT01CX_0138: Arginine ABC transporter, substrate-binding protein |
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*2
Clostridium tetani E88 Gene: CTC00558: Arginine ABC transporter, substrate-binding protein Site: position = -226 score = 4.78003 sequence = ATGTATAAATATTCGA Site: position = -73 score = 5.26697 sequence = TTGCATAAATATAAAT Gene: CTC00557: Arginine ABC transporter, substrate-binding protein |
Arginine ABC transporter, substrate-binding protein |
| artQ2 |
2
Clostridium acetobutylicum ATCC 824 Gene: CAC0377: Arginine ABC transporter, permease protein Gene: CAC3619: Arginine ABC transporter, permease protein |
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Gene: CKL_0979: Arginine ABC transporter, permease protein |
Gene: NT01CX_0137: Arginine ABC transporter, permease protein |
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Gene: CTC00559: Arginine ABC transporter, permease protein |
Arginine ABC transporter, permease protein |
| artM2 |
2
Clostridium acetobutylicum ATCC 824 Gene: CAC0378: Arginine ABC transporter, ATP-binding protein Gene: CAC3618: Arginine ABC transporter, ATP-binding protein |
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Gene: CBO0420: Arginine ABC transporter, ATP-binding protein |
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Gene: CKL_0980: Arginine ABC transporter, ATP-binding protein |
Gene: NT01CX_0136: Arginine ABC transporter, ATP-binding protein |
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Gene: CTC00560: Arginine ABC transporter, ATP-binding protein |
Arginine ABC transporter, ATP-binding protein |
| argG |
*
Clostridium acetobutylicum ATCC 824 Site: position = -123 score = 5.28548 sequence = ATGAATATTTATAAAA Site: position = -103 score = 4.71903 sequence = TTGCATAATTATAAGA Site: position = -83 score = 4.56267 sequence = ATTTATAATAATACCA Gene: CAC0973: Argininosuccinate synthase (EC 6.3.4.5) |
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Clostridium beijerincki NCIMB 8052 Site: position = -165 score = 4.66577 sequence = ATGAATATTTTTTCAT Site: position = -122 score = 4.83811 sequence = CTGTATAATTATAAAC Site: position = -46 score = 4.80433 sequence = ATGTATGTTTATGCAT Gene: Cbei_4515: Argininosuccinate synthase (EC 6.3.4.5) |
*
Clostridium botulinum A str. ATCC 3502 Site: position = -256 score = 4.68143 sequence = GTGCATAATTATAAAG Site: position = -139 score = 4.60916 sequence = TTGCATATTTATTATT Site: position = -119 score = 5.55159 sequence = ATGTATAATTATAAAA Gene: CBO2670: Argininosuccinate synthase (EC 6.3.4.5) |
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Clostridium butyricum 5521 Site: position = -87 score = 5.55159 sequence = ATGTATAATTATAAAA Gene: CBY_1679: Argininosuccinate synthase (EC 6.3.4.5) |
Gene: CKL_0981: Argininosuccinate synthase (EC 6.3.4.5) |
Gene: NT01CX_0135: Argininosuccinate synthase (EC 6.3.4.5) |
*
Clostridium perfringens ATCC 13124 Site: position = -72 score = 4.88931 sequence = TTGCATAAATATACTT Site: position = -52 score = 5.03443 sequence = ATGTATAATTATTAAC Gene: CPF_0683: Argininosuccinate synthase (EC 6.3.4.5) |
Gene: CTC00561: Argininosuccinate synthase (EC 6.3.4.5) |
Argininosuccinate synthase (EC 6.3.4.5) |
| argH |
Gene: CAC0974: Argininosuccinate lyase (EC 4.3.2.1) |
Gene: Cbei_4516: Argininosuccinate lyase (EC 4.3.2.1) |
Gene: CBO2669: Argininosuccinate lyase (EC 4.3.2.1) |
Gene: CBY_1678: Argininosuccinate lyase (EC 4.3.2.1) |
Gene: CKL_0982: Argininosuccinate lyase (EC 4.3.2.1) |
Gene: NT01CX_0134: Argininosuccinate lyase (EC 4.3.2.1) |
Gene: CPF_0682: Argininosuccinate lyase (EC 4.3.2.1) |
Gene: CTC00562: Argininosuccinate lyase (EC 4.3.2.1) |
Argininosuccinate lyase (EC 4.3.2.1) |
| argC |
*
Clostridium acetobutylicum ATCC 824 Site: position = -117 score = 5.17641 sequence = ATGAATAATTATACAC Site: position = -97 score = 4.95099 sequence = CTTTATAAATATTCAA Site: position = -63 score = 5.03576 sequence = TTGAATAATTATACTT Gene: CAC2390: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
Gene: Cbei_4517: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
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Gene: CBY_1677: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
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Clostridium kluyveri DSM 555 Site: position = -257 score = 4.74324 sequence = TTGTACATTTATAAAA Site: position = -224 score = 4.56952 sequence = TTGTATATTTATAATG Site: position = -123 score = 4.80201 sequence = ATTAATTTTTATAAAA Site: position = -102 score = 4.81086 sequence = TTGCATATTTATTTAT Gene: CKL_1553: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
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Clostridium novyi NT Site: position = -132 score = 5.00731 sequence = TTGAATAATTATACTA Site: position = -59 score = 4.87908 sequence = TTGAATAATTATGCTT Gene: NT01CX_2379: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
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N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
| argJ |
*2
Clostridium acetobutylicum ATCC 824 Site: position = -88 score = 5.29542 sequence = ATGCATAAATATAAAT Site: position = -68 score = 5.38497 sequence = TTGAATAATTATAAAA Gene: CAC3020: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) Gene: CAC2391: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: Cbei_4518: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
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Gene: CBY_1675: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: CKL_1554: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
Gene: NT01CX_2378: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
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Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
| argB |
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Clostridium acetobutylicum ATCC 824 Site: position = -98 score = 5.03576 sequence = AAGTATAATTATTCAA Site: position = -64 score = 4.95099 sequence = TTGAATATTTATAAAG Site: position = -44 score = 5.17641 sequence = GTGTATAATTATTCAT Gene: CAC2389: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: Cbei_4519: Acetylglutamate kinase (EC 2.7.2.8) |
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Gene: CBY_1674: Acetylglutamate kinase (EC 2.7.2.8) |
Gene: CKL_1555: Acetylglutamate kinase (EC 2.7.2.8) |
*
Clostridium novyi NT Site: position = -102 score = 4.87908 sequence = AAGCATAATTATTCAA Site: position = -29 score = 5.00731 sequence = TAGTATAATTATTCAA Gene: NT01CX_2380: Acetylglutamate kinase (EC 2.7.2.8) |
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Acetylglutamate kinase (EC 2.7.2.8) |
| argD |
Gene: CAC2388: Acetylornithine aminotransferase (EC 2.6.1.11) |
Gene: Cbei_4520: Acetylornithine aminotransferase (EC 2.6.1.11) |
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Gene: CBY_1673: Acetylornithine aminotransferase (EC 2.6.1.11) |
Gene: CKL_1556: Acetylornithine aminotransferase (EC 2.6.1.11) |
Gene: NT01CX_2381: Acetylornithine aminotransferase (EC 2.6.1.11) |
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Acetylornithine aminotransferase (EC 2.6.1.11) |
| argF |
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Gene: Cbei_4521: Ornithine carbamoyltransferase (EC 2.1.3.3) |
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Gene: CBY_1672: Ornithine carbamoyltransferase (EC 2.1.3.3) |
Gene: CKL_2376: Ornithine carbamoyltransferase (EC 2.1.3.3) |
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Ornithine carbamoyltransferase (EC 2.1.3.3) |
| carA |
*
Clostridium acetobutylicum ATCC 824 Site: position = -182 score = 5.29542 sequence = ATGCATAAATATAAAT Site: position = -81 score = 5.42365 sequence = ATGTATAAATATAAAA Gene: CAC2645: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
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Gene: CKL_2375: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
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Clostridium novyi NT Site: position = -77 score = 5.26697 sequence = ATGTATAAATATGAAA Site: position = -57 score = 5.08597 sequence = ATGTATAAAAATTCAA Gene: NT01CX_0383: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
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Carbamoyl-phosphate synthase small chain (EC 6.3.5.5) |
| carB |
Gene: CAC2644: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
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Gene: CKL_2374: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
Gene: NT01CX_0382: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
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Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) |
| CAC0376 |
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Clostridium acetobutylicum ATCC 824 Site: position = -65 score = 4.6096 sequence = TCGTATAAATATTAAA Site: position = -44 score = 4.60797 sequence = TTGTATACAAATACAA Gene: CAC0376: NG,NG-dimethylarginine dimethylaminohydrolase 1 (EC 3.5.3.18) |
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NG,NG-dimethylarginine dimethylaminohydrolase 1 (EC 3.5.3.18) |
| CAC3620 |
*2
Clostridium acetobutylicum ATCC 824 Site: position = -188 score = 4.53889 sequence = ATTAATGAATATAAAT Site: position = -131 score = 4.64186 sequence = TTGAATAAATATTCGT Site: position = -31 score = 4.9478 sequence = ATGAATAAAAATTCAA Gene: CAC0380: Periplasmic amino acid-binding protein Site: position = -195 score = 5.15725 sequence = ATGCATAAATATTAAT Site: position = -70 score = 4.89627 sequence = GTTAATAATTATTCAT Gene: CAC3620: Amino acid (probably glutamine) ABC transporter, periplasmic binding protein component |
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Amino acid (probably glutamine) ABC transporter, periplasmic binding protein component |
| CRON 2. | |||||||||
| argT |
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*
Clostridium botulinum A str. ATCC 3502 Site: position = -62 score = 5.42365 sequence = TTTTATATTTATACAT Gene: CBO1788: Predicted arginine uptake transporter |
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Clostridium butyricum 5521 Site: position = -31 score = 5.08916 sequence = TTGTATATTTATAAAG Site: position = 0 score = 5.07574 sequence = ATGAATAATAATTCAA Gene: CBY_2294: Predicted arginine uptake transporter |
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Clostridium novyi NT Site: position = -92 score = 5.2101 sequence = TTGTATTATTATAAAT Site: position = -72 score = 5.26697 sequence = ATGCATAAATATAAAA Gene: NT01CX_1828: Predicted arginine uptake transporter |
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Clostridium perfringens ATCC 13124 Site: position = -117 score = 5.42746 sequence = TTGAATATTTATACAT Gene: CPF_2910: Predicted arginine uptake transporter |
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Clostridium tetani E88 Site: position = -64 score = 4.74981 sequence = ATTAATATTTATGCAC Site: position = -34 score = 5.1288 sequence = TTGCATAAATATTAAT Gene: CTC00841: Predicted arginine uptake transporter |
Predicted arginine uptake transporter |
| CRON 3. | |||||||||
| artP |
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*
Clostridium beijerincki NCIMB 8052 Site: position = -240 score = 4.7292 sequence = TTTTATAATTTTAAAA Site: position = -104 score = 4.93376 sequence = ATGAATAATAATTAAA Site: position = -70 score = 4.60507 sequence = TTGAGTAAATATAAAA Site: position = -50 score = 4.60981 sequence = GTGTATAATTATGCTA Gene: Cbei_4781: Arginine ABC transporter, substrate-binding protein |
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Clostridium botulinum A str. ATCC 3502 Site: position = -43 score = 5.23084 sequence = ATGCATAATTATACAG Gene: CBO2018: Arginine ABC transporter, substrate-binding protein |
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Clostridium butyricum 5521 Site: position = -110 score = 4.68739 sequence = TTTAATATTTATTTAT Site: position = -76 score = 5.38497 sequence = TTGAATAATTATAAAA Site: position = -56 score = 5.17393 sequence = ATGTATAATTATACTA Gene: CBY_1781: Arginine ABC transporter, substrate-binding protein |
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Clostridium novyi NT Site: position = -267 score = 4.58655 sequence = TTTTAAAAATATGCAA Site: position = -115 score = 5.04466 sequence = GTGTATAAATATAAAT Site: position = -84 score = 4.8393 sequence = ATACATAAATATTCAT Site: position = -61 score = 5.39491 sequence = TTGCATAATTATAAAT Gene: NT01CX_0932: Arginine ABC transporter, substrate-binding protein |
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Clostridium perfringens ATCC 13124 Site: position = -261 score = 4.57217 sequence = ATGTATAAAAACACAA Site: position = -77 score = 4.92928 sequence = TTGCATTTTTATTCAT Site: position = -56 score = 5.5554 sequence = ATGTATAATTATTCAA Gene: CPF_0581: Arginine ABC transporter, substrate-binding protein |
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Arginine ABC transporter, substrate-binding protein |
| artQ |
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Gene: Cbei_4780: Arginine ABC transporter, permease protein |
Gene: CBO2017: Arginine ABC transporter, permease protein |
Gene: CBY_1780: Arginine ABC transporter, permease protein |
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Gene: NT01CX_0933: Arginine ABC transporter, permease protein |
Gene: CPF_0582: Arginine ABC transporter, permease protein |
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Arginine ABC transporter, permease protein |
| artM |
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Gene: Cbei_4779: Arginine ABC transporter, ATP-binding protein |
Gene: CBO2016: Arginine ABC transporter, ATP-binding protein |
Gene: CBY_1779: Arginine ABC transporter, ATP-binding protein |
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Gene: NT01CX_0934: Arginine ABC transporter, ATP-binding protein |
Gene: CPF_0583: Arginine ABC transporter, ATP-binding protein |
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Arginine ABC transporter, ATP-binding protein |
| CBO2015 |
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Gene: CBO2015: Aspartate aminotransferase (EC 2.6.1.1) |
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Aspartate aminotransferase (EC 2.6.1.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |