Regulog LexA - Clostridia-2
| Regulator type: | Transcription factor |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Phylum: | Firmicutes |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Clostridia-2
- By trascription factor - LexA
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Genome | Genes | Operons |
|---|---|---|
| Clostridium bartlettii DSM 16795 | 6 | 3 |
| Clostridium difficile 630 | 6 | 4 |
| Clostridium hiranonis DSM 13275 | 7 | 4 |
| Genes | Function | |||
|---|---|---|---|---|
| CRON 1. | ||||
| lexA |
*2
Clostridium bartlettii DSM 16795 Gene: CLOBAR_01864: SOS-response repressor and protease LexA (EC 3.4.21.88) Site: position = -105 score = 5.28884 sequence = AAGAACAAATGTTTGT Gene: CLOBAR_01865: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Clostridium difficile 630 Site: position = -86 score = 4.84549 sequence = AGGAACAAATGTTTGC Gene: CD1931: SOS-response repressor and protease LexA (EC 3.4.21.88) |
*
Clostridium hiranonis DSM 13275 Site: position = -165 score = 4.8644 sequence = ACGAATAAATGTTTGT Gene: CLOHIR_00530: SOS-response repressor and protease LexA (EC 3.4.21.88) |
SOS-response repressor and protease LexA (EC 3.4.21.88) |
| CRON 2. | ||||
| recA |
*
Clostridium bartlettii DSM 16795 Site: position = -62 score = 5.20194 sequence = GCGAACAAATGTTTGA Gene: CLOBAR_02147: Recombination protein A |
*
Clostridium difficile 630 Site: position = -41 score = 5.16777 sequence = GAGAACAAATGTTTGT Gene: CD1328: Recombination protein A |
*
Clostridium hiranonis DSM 13275 Site: position = -41 score = 5.24088 sequence = TAGAACAAATGTTTGA Gene: CLOHIR_01234: Recombination protein A |
Recombination protein A |
| CRON 3. | ||||
| ruvC |
*
Clostridium bartlettii DSM 16795 Site: position = -47 score = 4.63522 sequence = TAGAACATAGGTTTGG Gene: CLOBAR_01180: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
*
Clostridium difficile 630 Site: position = -67 score = 4.99114 sequence = TAGAACATAAGTTTTT Gene: CD2807: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
*
Clostridium hiranonis DSM 13275 Site: position = -79 score = 4.91252 sequence = TAGTACATATGTTTGA Gene: CLOHIR_00903: Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) |
| ruvA |
Gene: CLOBAR_01179: Holliday junction DNA helicase RuvA |
Gene: CD2806: Holliday junction DNA helicase RuvA |
Gene: CLOHIR_00904: Holliday junction DNA helicase RuvA |
Holliday junction DNA helicase RuvA |
| ruvB |
Gene: CLOBAR_01178: Holliday junction DNA helicase RuvB |
Gene: CD2805: Holliday junction DNA helicase RuvB |
Gene: CLOHIR_00905: Holliday junction DNA helicase RuvB |
Holliday junction DNA helicase RuvB |
| CRON 4. | ||||
| recD |
Gene: CLOBAR_00740: RecD-like DNA helicase YrrC |
Gene: CD0132: RecD-like DNA helicase YrrC |
*
Clostridium hiranonis DSM 13275 Site: position = -83 score = 5.10745 sequence = ACGAACTTATGTTTGA Gene: CLOHIR_00026: RecD-like DNA helicase YrrC |
RecD-like DNA helicase YrrC |
| comF |
Gene: CLOBAR_00739: ComF operon protein C |
Gene: CD0133: ComF operon protein C |
Gene: CLOHIR_00027: ComF operon protein C |
ComF operon protein C |
| CRON 5. | ||||
| CD1630 |
|
*
Clostridium difficile 630 Site: position = -89 score = 4.989 sequence = AAAAACTTATGTTTGC Gene: CD1630: LexA regulated |
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LexA regulated |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |