Regulog AgaR - Streptococcaceae

Properties
Regulator type:	Transcription factor
Regulator family:	GntR/Others
Regulation mode:	repressor
Biological process:	N-acetylgalactosamine utilization
Effector:	N-acetylgalactosamine
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 16 sites [see more]

Member of regulog collections

By taxonomy - Streptococcaceae
By TF family - GntR/Others
By effector - N-acetylgalactosamine
By pathway - N-acetylgalactosamine utilization

Statistics of regulated genes
Genome	Genes	Operons
Lactococcus lactis subsp. cremoris SK11
Lactococcus lactis subsp. lactis Il1403
Streptococcus agalactiae 2603V/R
Streptococcus dysgalactiae subsp. equisimilis GGS_124	6	2
Streptococcus equi subsp. zooepidemicus MGCS10565	6	2
Streptococcus gallolyticus UCN34
Streptococcus gordonii str. Challis substr. CH1	6	2
Streptococcus mitis B6	6	2
Streptococcus mutans UA159
Streptococcus pneumoniae TIGR4	6	2
Streptococcus pyogenes M1 GAS
Streptococcus sanguinis SK36	6	2
Streptococcus suis 05ZYH33	6	2
Streptococcus thermophilus CNRZ1066
Streptococcus uberis 0140J	6	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
bgaC	Lactococcus lactis subsp. cremoris SK11	Lactococcus lactis subsp. lactis Il1403	Streptococcus agalactiae 2603V/R	* Streptococcus dysgalactiae subsp. equisimilis GGS_124 Site: position = -89 score = 5.31083 sequence = TTAGCTATTATAACAAAAAA Gene: SDEG_0679: Beta-galactosidase (EC 3.2.1.23)	* Streptococcus equi subsp. zooepidemicus MGCS10565 Site: position = -116 score = 4.74258 sequence = AATACGATTATAGCAAAAAT Gene: Sez_0741: Beta-galactosidase (EC 3.2.1.23)	Streptococcus gallolyticus UCN34	* Streptococcus gordonii str. Challis substr. CH1 Site: position = -67 score = 5.56188 sequence = AATGTTATTATATTAATTAA Gene: SGO_0043: Beta-galactosidase (EC 3.2.1.23)	* Streptococcus mitis B6 Site: position = -56 score = 5.48484 sequence = ATATTTAATATATCAACAAA Gene: smi_0079: Beta-galactosidase (EC 3.2.1.23)	Streptococcus mutans UA159	* Streptococcus pneumoniae TIGR4 Site: position = -56 score = 5.56325 sequence = ATAATTAATATAACAACAAA Gene: SP_0060: Beta-galactosidase (EC 3.2.1.23)	Streptococcus pyogenes M1 GAS	* Streptococcus sanguinis SK36 Site: position = -61 score = 5.51401 sequence = AAATTTATTATATTAATATT Gene: SSA_0053: Beta-galactosidase (EC 3.2.1.23)	* Streptococcus suis 05ZYH33 Site: position = -48 score = 4.90934 sequence = AGTGTTAGTATATTAATAGA Gene: SSU05_0449: Beta-galactosidase (EC 3.2.1.23)	Streptococcus thermophilus CNRZ1066	* Streptococcus uberis 0140J Site: position = -103 score = 5.09114 sequence = AGAACTATTATAACAGAAAT Gene: SUB0042: Beta-galactosidase (EC 3.2.1.23)	Beta-galactosidase (EC 3.2.1.23)
gadV	Lactococcus lactis subsp. cremoris SK11	Lactococcus lactis subsp. lactis Il1403	Streptococcus agalactiae 2603V/R	Streptococcus dysgalactiae subsp. equisimilis GGS_124 Gene: SDEG_0680: Predicted galactosamine disaccharide-specific PTS system, IIB component (EC 2.7.1.69)	Streptococcus equi subsp. zooepidemicus MGCS10565 Gene: Sez_0742: Predicted galactosamine disaccharide-specific PTS system, IIB component (EC 2.7.1.69)	Streptococcus gallolyticus UCN34	Streptococcus gordonii str. Challis substr. CH1 Gene: SGO_0044: Predicted galactosamine disaccharide-specific PTS system, IIB component (EC 2.7.1.69)	Streptococcus mitis B6 Gene: smi_0080: Predicted galactosamine disaccharide-specific PTS system, IIB component (EC 2.7.1.69)	Streptococcus mutans UA159	Streptococcus pneumoniae TIGR4 Gene: SP_0061: Predicted galactosamine disaccharide-specific PTS system, IIB component (EC 2.7.1.69)	Streptococcus pyogenes M1 GAS	Streptococcus sanguinis SK36 Gene: SSA_0054: Predicted galactosamine disaccharide-specific PTS system, IIB component (EC 2.7.1.69)	Streptococcus suis 05ZYH33 Gene: SSU05_0450: Predicted galactosamine disaccharide-specific PTS system, IIB component (EC 2.7.1.69)	Streptococcus thermophilus CNRZ1066	Streptococcus uberis 0140J Gene: SUB0043: Predicted galactosamine disaccharide-specific PTS system, IIB component (EC 2.7.1.69)	Predicted galactosamine disaccharide-specific PTS system, IIB component (EC 2.7.1.69)
gadW	Lactococcus lactis subsp. cremoris SK11	Lactococcus lactis subsp. lactis Il1403	Streptococcus agalactiae 2603V/R	Streptococcus dysgalactiae subsp. equisimilis GGS_124 Gene: SDEG_0681: Predicted galactosamine disaccharide-specific PTS system, IIC component (EC 2.7.1.69)	Streptococcus equi subsp. zooepidemicus MGCS10565 Gene: Sez_0743: Predicted galactosamine disaccharide-specific PTS system, IIC component (EC 2.7.1.69)	Streptococcus gallolyticus UCN34	Streptococcus gordonii str. Challis substr. CH1 Gene: SGO_0045: Predicted galactosamine disaccharide-specific PTS system, IIC component (EC 2.7.1.69)	Streptococcus mitis B6 Gene: smi_0081: Predicted galactosamine disaccharide-specific PTS system, IIC component (EC 2.7.1.69)	Streptococcus mutans UA159	Streptococcus pneumoniae TIGR4 Gene: SP_0062: Predicted galactosamine disaccharide-specific PTS system, IIC component (EC 2.7.1.69)	Streptococcus pyogenes M1 GAS	Streptococcus sanguinis SK36 Gene: SSA_0055: Predicted galactosamine disaccharide-specific PTS system, IIC component (EC 2.7.1.69)	Streptococcus suis 05ZYH33 Gene: SSU05_0451: Predicted galactosamine disaccharide-specific PTS system, IIC component (EC 2.7.1.69)	Streptococcus thermophilus CNRZ1066	Streptococcus uberis 0140J Gene: SUB0044: Predicted galactosamine disaccharide-specific PTS system, IIC component (EC 2.7.1.69)	Predicted galactosamine disaccharide-specific PTS system, IIC component (EC 2.7.1.69)
gadE	Lactococcus lactis subsp. cremoris SK11	Lactococcus lactis subsp. lactis Il1403	Streptococcus agalactiae 2603V/R	Streptococcus dysgalactiae subsp. equisimilis GGS_124 Gene: SDEG_0682: Predicted galactosamine disaccharide-specific PTS system, IID component (EC 2.7.1.69)	Streptococcus equi subsp. zooepidemicus MGCS10565 Gene: Sez_0744: Predicted galactosamine disaccharide-specific PTS system, IID component (EC 2.7.1.69)	Streptococcus gallolyticus UCN34	Streptococcus gordonii str. Challis substr. CH1 Gene: SGO_0046: Predicted galactosamine disaccharide-specific PTS system, IID component (EC 2.7.1.69)	Streptococcus mitis B6 Gene: smi_0082: Predicted galactosamine disaccharide-specific PTS system, IID component (EC 2.7.1.69)	Streptococcus mutans UA159	Streptococcus pneumoniae TIGR4 Gene: SP_0063: Predicted galactosamine disaccharide-specific PTS system, IID component (EC 2.7.1.69)	Streptococcus pyogenes M1 GAS	Streptococcus sanguinis SK36 Gene: SSA_0056: Predicted galactosamine disaccharide-specific PTS system, IID component (EC 2.7.1.69)	Streptococcus suis 05ZYH33 Gene: SSU05_0452: Predicted galactosamine disaccharide-specific PTS system, IID component (EC 2.7.1.69)	Streptococcus thermophilus CNRZ1066	Streptococcus uberis 0140J Gene: SUB0045: Predicted galactosamine disaccharide-specific PTS system, IID component (EC 2.7.1.69)	Predicted galactosamine disaccharide-specific PTS system, IID component (EC 2.7.1.69)
gadF	Lactococcus lactis subsp. cremoris SK11	Lactococcus lactis subsp. lactis Il1403	Streptococcus agalactiae 2603V/R	Streptococcus dysgalactiae subsp. equisimilis GGS_124 Gene: SDEG_0683: Predicted galactosamine disaccharide-specific PTS system, IIA component (EC 2.7.1.69)	Streptococcus equi subsp. zooepidemicus MGCS10565 Gene: Sez_0745: Predicted galactosamine disaccharide-specific PTS system, IIA component (EC 2.7.1.69)	Streptococcus gallolyticus UCN34	Streptococcus gordonii str. Challis substr. CH1 Gene: SGO_0047: Predicted galactosamine disaccharide-specific PTS system, IIA component (EC 2.7.1.69)	Streptococcus mitis B6 Gene: smi_0083: Predicted galactosamine disaccharide-specific PTS system, IIA component (EC 2.7.1.69)	Streptococcus mutans UA159	Streptococcus pneumoniae TIGR4 Gene: SP_0064: Predicted galactosamine disaccharide-specific PTS system, IIA component (EC 2.7.1.69)	Streptococcus pyogenes M1 GAS	Streptococcus sanguinis SK36 Gene: SSA_0057: Predicted galactosamine disaccharide-specific PTS system, IIA component (EC 2.7.1.69)	Streptococcus suis 05ZYH33 Gene: SSU05_0453: Predicted galactosamine disaccharide-specific PTS system, IIA component (EC 2.7.1.69)	Streptococcus thermophilus CNRZ1066	Streptococcus uberis 0140J Gene: SUB0046: Predicted galactosamine disaccharide-specific PTS system, IIA component (EC 2.7.1.69)	Predicted galactosamine disaccharide-specific PTS system, IIA component (EC 2.7.1.69)

CRON 2.
agaR	Lactococcus lactis subsp. cremoris SK11	Lactococcus lactis subsp. lactis Il1403	Streptococcus agalactiae 2603V/R	* Streptococcus dysgalactiae subsp. equisimilis GGS_124 Site: position = -51 score = 5.31083 sequence = TTTTTTGTTATAATAGCTAA Gene: SDEG_0678: N-acetylgalactosamine utilization transcriptional regulator AgaR, GntR family	* Streptococcus equi subsp. zooepidemicus MGCS10565 Site: position = -43 score = 4.74258 sequence = ATTTTTGCTATAATCGTATT Gene: Sez_0740: N-acetylgalactosamine utilization transcriptional regulator AgaR, GntR family	Streptococcus gallolyticus UCN34	* Streptococcus gordonii str. Challis substr. CH1 Site: position = -107 score = 5.56188 sequence = TTAATTAATATAATAACATT Gene: SGO_0042: N-acetylgalactosamine utilization transcriptional regulator AgaR, GntR family	* Streptococcus mitis B6 Site: position = -282 score = 5.48484 sequence = TTTGTTGATATATTAAATAT Gene: smi_0078: N-acetylgalactosamine utilization transcriptional regulator AgaR, GntR family	Streptococcus mutans UA159	* Streptococcus pneumoniae TIGR4 Site: position = -312 score = 5.56325 sequence = TTTGTTGTTATATTAATTAT Gene: SP_0058: N-acetylgalactosamine utilization transcriptional regulator AgaR, GntR family	Streptococcus pyogenes M1 GAS	* Streptococcus sanguinis SK36 Site: position = -98 score = 5.51401 sequence = AATATTAATATAATAAATTT Gene: SSA_0052: N-acetylgalactosamine utilization transcriptional regulator AgaR, GntR family	* Streptococcus suis 05ZYH33 Site: position = -157 score = 4.90934 sequence = TCTATTAATATACTAACACT Gene: SSU05_0448: N-acetylgalactosamine utilization transcriptional regulator AgaR, GntR family	Streptococcus thermophilus CNRZ1066	* Streptococcus uberis 0140J Site: position = -53 score = 5.09114 sequence = ATTTCTGTTATAATAGTTCT Gene: SUB0041: N-acetylgalactosamine utilization transcriptional regulator AgaR, GntR family	N-acetylgalactosamine utilization transcriptional regulator AgaR, GntR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog AgaR - Streptococcaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --