Regulog Glycine - Burkholderia
| Regulator type: | RNA regulatory element |
| Name: | Glycine |
| RFAM: | RF00504 |
| Regulation mode: | |
| Biological process: | Glycine metabolism |
| Effector: | Glycine |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Burkholderia
- By RNA motif - Glycine
- By effector - Glycine
- By pathway - Glycine metabolism
| Genome | Genes | Operons |
|---|---|---|
| Burkholderia pseudomallei K96243 | 2 | 1 |
| Burkholderia mallei ATCC 23344 | 5 | 1 |
| Burkholderia sp. 383 | 5 | 1 |
| Burkholderia cepacia AMMD | 5 | 1 |
| Burkholderia vietnamiensis G4 | 6 | 2 |
| Burkholderia glumae BGR1 | 5 | 1 |
| Burkholderia xenovorans LB400 | 7 | 3 |
| Burkholderia phymatum STM815 | 3 | 1 |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| dadA |
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*
Burkholderia vietnamiensis G4 Site: position = -143 score = 44.74 sequence = ATCTGGAGAGAGGCG... Site: position = -242 score = 68.56 sequence = GAAACAACACGGGAG... Gene: Bcep1808_6673: D-amino acid dehydrogenase small subunit (EC 1.4.99.1) |
|
*2
Burkholderia xenovorans LB400 Site: position = -139 score = 50.87 sequence = CAGGACAATCTGGAG... Site: position = -228 score = 48.75 sequence = TGAATCGCGCGGAAG... Gene: Bxe_C0404: D-amino acid dehydrogenase small subunit (EC 1.4.99.1) Site: position = -276 score = 62.89 sequence = AATGCAGCGCGGGAG... Site: position = -181 score = 35.12 sequence = ATCTGGAGAGCGGCG... Gene: Bxe_B1348: D-amino acid dehydrogenase small subunit (EC 1.4.99.1) |
|
D-amino acid dehydrogenase small subunit (EC 1.4.99.1) |
| CRON 2. | |||||||||
| gcvT |
*
Burkholderia pseudomallei K96243 Site: position = -233 score = 29.75 sequence = TTTCGCACTCTGGAG... Site: position = -375 score = 37.49 sequence = CGCACGCGTCGGGAG... Gene: BPSL3360: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Burkholderia mallei ATCC 23344 Site: position = -377 score = 37.49 sequence = TCCGCACGCGTCGGG... Site: position = -235 score = 29.75 sequence = TTTTTCGCACTCTGG... Gene: BMA2994.1: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Burkholderia sp. 383 Site: position = -356 score = 41.67 sequence = CCCGCACGCGTCGGG... Gene: Bcep18194_A3325: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Burkholderia cepacia AMMD Site: position = -355 score = 35.09 sequence = CCCGCACGCGTCGGG... Site: position = -219 score = 29.59 sequence = CTCCCCGCACTCTGG... Gene: Bamb_0133: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Burkholderia vietnamiensis G4 Site: position = -355 score = 38.51 sequence = CCCGCACGCGTCGGG... Gene: Bcep1808_0151: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Burkholderia glumae BGR1 Site: position = -216 score = 30.35 sequence = GAGTTCGGACTCTGG... Site: position = -352 score = 43.31 sequence = CCGGCACGCGTCGGG... Gene: bglu_1g01030: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Burkholderia xenovorans LB400 Site: position = -195 score = 37.85 sequence = TTTCGCACTCTGGAG... Site: position = -330 score = 38.73 sequence = CGTACGCGTCGGGAG... Gene: Bxe_A0056: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
*
Burkholderia phymatum STM815 Site: position = -221 score = 33.14 sequence = TTTCGCACTCTGGAG... Site: position = -380 score = 44.29 sequence = CGCACGCGTCGGGAG... Gene: Bphy_3003: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
| gcvH |
Gene: BPSL3361: Glycine cleavage system H protein |
Gene: BMA2994: Glycine cleavage system H protein |
Gene: Bcep18194_A3324: Glycine cleavage system H protein |
Gene: Bamb_0132: Glycine cleavage system H protein |
Gene: Bcep1808_0150: Glycine cleavage system H protein |
Gene: bglu_1g01020: Glycine cleavage system H protein |
Gene: Bxe_A0055: Glycine cleavage system H protein |
Gene: Bphy_3004: Glycine cleavage system H protein |
Glycine cleavage system H protein |
| gcvP |
Gene: BPSL3362: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: BMA2993: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: Bcep18194_A3323: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: Bamb_0131: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: Bcep1808_0149: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: bglu_1g01010: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: Bxe_A0054: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: Bphy_3005: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
| BPSL3363 |
Gene: BPSL3363: hypothetical protein |
Gene: BMA2992: hypothetical protein |
Gene: Bcep18194_A3322: hypothetical protein |
Gene: Bamb_0130: hypothetical protein |
Gene: Bcep1808_0148: hypothetical protein |
Gene: bglu_1g01000: hypothetical protein |
Gene: Bxe_A0053: hypothetical protein |
Gene: Bphy_3014: hypothetical protein |
hypothetical protein |
| sdaA |
Gene: BPSL3364: L-serine dehydratase (EC 4.3.1.17) |
Gene: BMA2991: L-serine dehydratase (EC 4.3.1.17) |
Gene: Bcep18194_A3321: L-serine dehydratase (EC 4.3.1.17) |
Gene: Bamb_0129: L-serine dehydratase (EC 4.3.1.17) |
Gene: Bcep1808_0147: L-serine dehydratase (EC 4.3.1.17) |
Gene: bglu_1g00990: L-serine dehydratase (EC 4.3.1.17) |
Gene: Bxe_A0052: L-serine dehydratase (EC 4.3.1.17) |
Gene: Bphy_3015: L-serine dehydratase (EC 4.3.1.17) |
L-serine dehydratase (EC 4.3.1.17) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |