Regulog Glycine - Burkholderia

Properties
Regulator type:	RNA regulatory element
Name:	Glycine
RFAM:	RF00504
Regulation mode:
Biological process:	Glycine metabolism
Effector:	Glycine
Phylum:	Proteobacteria

Member of regulog collections

By taxonomy - Burkholderia
By RNA motif - Glycine
By effector - Glycine
By pathway - Glycine metabolism

Statistics of regulated genes
Genome	Genes	Operons
Burkholderia pseudomallei K96243	2	1
Burkholderia mallei ATCC 23344	5	1
Burkholderia sp. 383	5	1
Burkholderia cepacia AMMD	5	1
Burkholderia vietnamiensis G4	6	2
Burkholderia glumae BGR1	5	1
Burkholderia xenovorans LB400	7	3
Burkholderia phymatum STM815	3	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes									Function

CRON 1.
dadA	Burkholderia pseudomallei K96243	Burkholderia mallei ATCC 23344	Burkholderia sp. 383	Burkholderia cepacia AMMD	* Burkholderia vietnamiensis G4 Site: position = -143 score = 44.74 sequence = ATCTGGAGAGAGGCG... Site: position = -242 score = 68.56 sequence = GAAACAACACGGGAG... Gene: Bcep1808_6673: D-amino acid dehydrogenase small subunit (EC 1.4.99.1)	Burkholderia glumae BGR1	2 Burkholderia xenovorans LB400* Site: position = -139 score = 50.87 sequence = CAGGACAATCTGGAG... Site: position = -228 score = 48.75 sequence = TGAATCGCGCGGAAG... Gene: Bxe_C0404: D-amino acid dehydrogenase small subunit (EC 1.4.99.1) Site: position = -276 score = 62.89 sequence = AATGCAGCGCGGGAG... Site: position = -181 score = 35.12 sequence = ATCTGGAGAGCGGCG... Gene: Bxe_B1348: D-amino acid dehydrogenase small subunit (EC 1.4.99.1)	Burkholderia phymatum STM815	D-amino acid dehydrogenase small subunit (EC 1.4.99.1)

CRON 2.
gcvT	* Burkholderia pseudomallei K96243 Site: position = -233 score = 29.75 sequence = TTTCGCACTCTGGAG... Site: position = -375 score = 37.49 sequence = CGCACGCGTCGGGAG... Gene: BPSL3360: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Burkholderia mallei ATCC 23344 Site: position = -377 score = 37.49 sequence = TCCGCACGCGTCGGG... Site: position = -235 score = 29.75 sequence = TTTTTCGCACTCTGG... Gene: BMA2994.1: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Burkholderia sp. 383 Site: position = -356 score = 41.67 sequence = CCCGCACGCGTCGGG... Gene: Bcep18194_A3325: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Burkholderia cepacia AMMD Site: position = -355 score = 35.09 sequence = CCCGCACGCGTCGGG... Site: position = -219 score = 29.59 sequence = CTCCCCGCACTCTGG... Gene: Bamb_0133: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Burkholderia vietnamiensis G4 Site: position = -355 score = 38.51 sequence = CCCGCACGCGTCGGG... Gene: Bcep1808_0151: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Burkholderia glumae BGR1 Site: position = -216 score = 30.35 sequence = GAGTTCGGACTCTGG... Site: position = -352 score = 43.31 sequence = CCGGCACGCGTCGGG... Gene: bglu_1g01030: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Burkholderia xenovorans LB400 Site: position = -195 score = 37.85 sequence = TTTCGCACTCTGGAG... Site: position = -330 score = 38.73 sequence = CGTACGCGTCGGGAG... Gene: Bxe_A0056: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	* Burkholderia phymatum STM815 Site: position = -221 score = 33.14 sequence = TTTCGCACTCTGGAG... Site: position = -380 score = 44.29 sequence = CGCACGCGTCGGGAG... Gene: Bphy_3003: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)	Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10)
gcvH	Burkholderia pseudomallei K96243 Gene: BPSL3361: Glycine cleavage system H protein	Burkholderia mallei ATCC 23344 Gene: BMA2994: Glycine cleavage system H protein	Burkholderia sp. 383 Gene: Bcep18194_A3324: Glycine cleavage system H protein	Burkholderia cepacia AMMD Gene: Bamb_0132: Glycine cleavage system H protein	Burkholderia vietnamiensis G4 Gene: Bcep1808_0150: Glycine cleavage system H protein	Burkholderia glumae BGR1 Gene: bglu_1g01020: Glycine cleavage system H protein	Burkholderia xenovorans LB400 Gene: Bxe_A0055: Glycine cleavage system H protein	Burkholderia phymatum STM815 Gene: Bphy_3004: Glycine cleavage system H protein	Glycine cleavage system H protein
gcvP	Burkholderia pseudomallei K96243 Gene: BPSL3362: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Burkholderia mallei ATCC 23344 Gene: BMA2993: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Burkholderia sp. 383 Gene: Bcep18194_A3323: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Burkholderia cepacia AMMD Gene: Bamb_0131: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Burkholderia vietnamiensis G4 Gene: Bcep1808_0149: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Burkholderia glumae BGR1 Gene: bglu_1g01010: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Burkholderia xenovorans LB400 Gene: Bxe_A0054: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Burkholderia phymatum STM815 Gene: Bphy_3005: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)	Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2)
BPSL3363	Burkholderia pseudomallei K96243 Gene: BPSL3363: hypothetical protein	Burkholderia mallei ATCC 23344 Gene: BMA2992: hypothetical protein	Burkholderia sp. 383 Gene: Bcep18194_A3322: hypothetical protein	Burkholderia cepacia AMMD Gene: Bamb_0130: hypothetical protein	Burkholderia vietnamiensis G4 Gene: Bcep1808_0148: hypothetical protein	Burkholderia glumae BGR1 Gene: bglu_1g01000: hypothetical protein	Burkholderia xenovorans LB400 Gene: Bxe_A0053: hypothetical protein	Burkholderia phymatum STM815 Gene: Bphy_3014: hypothetical protein	hypothetical protein
sdaA	Burkholderia pseudomallei K96243 Gene: BPSL3364: L-serine dehydratase (EC 4.3.1.17)	Burkholderia mallei ATCC 23344 Gene: BMA2991: L-serine dehydratase (EC 4.3.1.17)	Burkholderia sp. 383 Gene: Bcep18194_A3321: L-serine dehydratase (EC 4.3.1.17)	Burkholderia cepacia AMMD Gene: Bamb_0129: L-serine dehydratase (EC 4.3.1.17)	Burkholderia vietnamiensis G4 Gene: Bcep1808_0147: L-serine dehydratase (EC 4.3.1.17)	Burkholderia glumae BGR1 Gene: bglu_1g00990: L-serine dehydratase (EC 4.3.1.17)	Burkholderia xenovorans LB400 Gene: Bxe_A0052: L-serine dehydratase (EC 4.3.1.17)	Burkholderia phymatum STM815 Gene: Bphy_3015: L-serine dehydratase (EC 4.3.1.17)	L-serine dehydratase (EC 4.3.1.17)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog Glycine - Burkholderia

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --