Regulog Cobalamin - Caulobacterales
| Regulator type: | RNA regulatory element |
| Name: | Cobalamin |
| RFAM: | RF00174 |
| Regulation mode: | |
| Biological process: | Cobalamin biosynthesis |
| Effector: | Adenosylcobalamin |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Caulobacterales
- By RNA motif - Cobalamin
- By effector - Adenosylcobalamin
- By pathway - Cobalamin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Caulobacter crescentus CB15 | 3 | 2 |
| Caulobacter segnis ATCC 21756 | 13 | 3 |
| Caulobacter sp. K31 | 9 | 1 |
| Phenylobacterium zucineum HLK1 | 3 | 1 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| btuB |
*
Caulobacter crescentus CB15 Site: position = -324 score = 128.83 sequence = GCTCTAGCTTCGCGT... Gene: CC1750: Outer membrane vitamin B12 receptor BtuB |
*
Caulobacter segnis ATCC 21756 Site: position = -331 score = 116.94 sequence = GGCCTTGCGACGCGT... Gene: Cseg_1992: Outer membrane vitamin B12 receptor BtuB |
*
Caulobacter sp. K31 Site: position = -309 score = 109.8 sequence = GTGCAGCTCTCGCGA... Gene: Caul_2735: Outer membrane vitamin B12 receptor BtuB |
*
Phenylobacterium zucineum HLK1 Site: position = -290 score = 108.91 sequence = CGGCGCACTTACCGG... Gene: PHZ_c1918: Outer membrane vitamin B12 receptor BtuB |
Outer membrane vitamin B12 receptor BtuB |
| cobD |
|
Gene: Cseg_1993: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
Gene: Caul_2736: L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
|
L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) |
| btuF |
|
Gene: Cseg_1994: Vitamin B12 ABC transporter, B12-binding component BtuF |
Gene: Caul_2738: Vitamin B12 ABC transporter, B12-binding component BtuF |
Gene: PHZ_c1916: Vitamin B12 ABC transporter, B12-binding component BtuF |
Vitamin B12 ABC transporter, B12-binding component BtuF |
| btuC |
|
Gene: Cseg_1995: Vitamin B12 ABC transporter, permease component BtuC |
Gene: Caul_2739: Vitamin B12 ABC transporter, permease component BtuC |
|
Vitamin B12 ABC transporter, permease component BtuC |
| btuD |
|
Gene: Cseg_1996: Vitamin B12 ABC transporter, ATPase component BtuD |
Gene: Caul_2740: Vitamin B12 ABC transporter, ATPase component BtuD |
|
Vitamin B12 ABC transporter, ATPase component BtuD |
| cbiB |
|
Gene: Cseg_1997: Adenosylcobinamide-phosphate synthase |
Gene: Caul_2741: Adenosylcobinamide-phosphate synthase |
|
Adenosylcobinamide-phosphate synthase |
| cbiP |
2
Caulobacter crescentus CB15 Gene: CC1751: Cobyric acid synthase Gene: CC2694: Cobyric acid synthase |
Gene: Cseg_1998: Cobyric acid synthase |
Gene: Caul_2617: Cobyric acid synthase |
|
Cobyric acid synthase |
| cobT |
Gene: CC1309: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
2
Caulobacter segnis ATCC 21756 Gene: Cseg_1999: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) Gene: Cseg_1596: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
2
Caulobacter sp. K31 Gene: Caul_2047: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) Gene: Caul_2742: Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
|
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) |
| cobS |
|
Gene: Cseg_2000: cobalamin 5'-phosphate synthase |
Gene: Caul_2743: cobalamin 5'-phosphate synthase |
|
cobalamin 5'-phosphate synthase |
| btuR |
|
*
Caulobacter segnis ATCC 21756 Site: position = -221 score = 87.95 sequence = CTACGCCGGACCTCG... Gene: Cseg_1584: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
Gene: Caul_2737: Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
|
Cob(I)alamin adenosyltransferase (EC 2.5.1.17) |
| PHZ_c1917 |
|
|
|
Gene: PHZ_c1917: hypothetical protein |
hypothetical protein |
| cfrX |
|
Gene: Cseg_1585: hypothetical protein |
|
|
hypothetical protein |
| CRON 2. | |||||
| Cseg_1811 |
|
*
Caulobacter segnis ATCC 21756 Site: position = -317 score = 115.09 sequence = CGTTTGATAGGGTTG... Gene: Cseg_1811: hypothetical protein |
|
|
hypothetical protein |
| metE |
*
Caulobacter crescentus CB15 Site: position = -345 score = 98.6 sequence = TCTGTTGCCGTTGTC... Gene: CC0482: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
Gene: Cseg_1810: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
|
|
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |