Regulog TPP - Caulobacterales
| Regulator type: | RNA regulatory element |
| Name: | TPP |
| RFAM: | RF00059 |
| Regulation mode: | |
| Biological process: | Thiamine biosynthesis |
| Effector: | Thiamine pyrophosphate |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Caulobacterales
- By RNA motif - TPP
- By effector - Thiamine pyrophosphate
- By pathway - Thiamine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Caulobacter crescentus CB15 | 1 | 1 |
| Caulobacter segnis ATCC 21756 | 1 | 1 |
| Caulobacter sp. K31 | 1 | 1 |
| Phenylobacterium zucineum HLK1 | 1 | 1 |
| Genes | Function | ||||
|---|---|---|---|---|---|
| CRON 1. | |||||
| thiC |
*
Caulobacter crescentus CB15 Site: position = -180 score = 63.1 sequence = CGTCTGTTCACCGGG... Gene: CC2029: Thiamin biosynthesis protein ThiC |
*
Caulobacter segnis ATCC 21756 Site: position = -178 score = 56.95 sequence = CTTGTTCACCGGGGG... Gene: Cseg_1401: Thiamin biosynthesis protein ThiC |
*
Caulobacter sp. K31 Site: position = -175 score = 59.11 sequence = GTTCACCGGGGGGCC... Gene: Caul_3175: Thiamin biosynthesis protein ThiC |
*
Phenylobacterium zucineum HLK1 Site: position = -153 score = 61.52 sequence = GCGCCAATCCTCGGG... Gene: PHZ_c2909: Thiamin biosynthesis protein ThiC |
Thiamin biosynthesis protein ThiC |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |