Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog TPP - Caulobacterales

Properties
Regulator type: RNA regulatory element
Name: TPP
RFAM: RF00059
Regulation mode:
Biological process: Thiamine biosynthesis
Effector: Thiamine pyrophosphate
Phylum: Proteobacteria
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Caulobacter crescentus CB15 1 1
Caulobacter segnis ATCC 21756 1 1
Caulobacter sp. K31 1 1
Phenylobacterium zucineum HLK1 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
thiC
*
Caulobacter crescentus CB15

Site:
position = -180
score = 63.1
sequence = CGTCTGTTCACCGGG...

Gene: CC2029: Thiamin biosynthesis protein ThiC
*
Caulobacter segnis ATCC 21756

Site:
position = -178
score = 56.95
sequence = CTTGTTCACCGGGGG...

Gene: Cseg_1401: Thiamin biosynthesis protein ThiC
*
Caulobacter sp. K31

Site:
position = -175
score = 59.11
sequence = GTTCACCGGGGGGCC...

Gene: Caul_3175: Thiamin biosynthesis protein ThiC
*
Phenylobacterium zucineum HLK1

Site:
position = -153
score = 61.52
sequence = GCGCCAATCCTCGGG...

Gene: PHZ_c2909: Thiamin biosynthesis protein ThiC
Thiamin biosynthesis protein ThiC
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD