Regulog SAM_alpha - Rhodobacterales

Properties
Regulator type:	RNA regulatory element
Name:	SAM_alpha
RFAM:	RF00521
Regulation mode:
Biological process:	Methionine biosynthesis
Effector:	S-adenosylmethionine
Phylum:	Proteobacteria

Member of regulog collections

By taxonomy - Rhodobacterales
By RNA motif - SAM_alpha
By effector - S-adenosylmethionine
By pathway - Methionine biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Rhodobacter sphaeroides 2.4.1	1	1
Paracoccus denitrificans PD1222
Jannaschia sp. CCS1	1	1
Rhodobacterales bacterium HTCC2654	1	1
Oceanicola granulosus HTCC2516	1	1
Loktanella vestfoldensis SKA53	1	1
Oceanicola batsensis HTCC2597	1	1
Roseovarius nubinhibens ISM	1	1
Roseovarius sp. 217	1	1
Sulfitobacter sp. EE-36	1	1
Silicibacter TM1040	1	1
Silicibacter pomeroyi DSS-3	1	1
Roseobacter sp. MED193	1	1
Hyphomonas neptunium ATCC 15444	1	1
Oceanicaulis alexandrii HTCC2633	3	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
hom	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0403: Homoserine dehydrogenase (EC 1.1.1.3)	Paracoccus denitrificans PD1222 Gene: Pden_3678: Homoserine dehydrogenase (EC 1.1.1.3)	Jannaschia sp. CCS1 Gene: Jann_2998: Homoserine dehydrogenase (EC 1.1.1.3)	Rhodobacterales bacterium HTCC2654 Gene: RB2654_21303: Homoserine dehydrogenase (EC 1.1.1.3)	Oceanicola granulosus HTCC2516 Gene: OG2516_06317: Homoserine dehydrogenase (EC 1.1.1.3)	Loktanella vestfoldensis SKA53 Gene: SKA53_01871: Homoserine dehydrogenase (EC 1.1.1.3)	Oceanicola batsensis HTCC2597 Gene: OB2597_00930: Homoserine dehydrogenase (EC 1.1.1.3)	Roseovarius nubinhibens ISM Gene: ISM_12920: Homoserine dehydrogenase (EC 1.1.1.3)	Roseovarius sp. 217 Gene: ROS217_17087: Homoserine dehydrogenase (EC 1.1.1.3)	Sulfitobacter sp. EE-36 Gene: EE36_12348: Homoserine dehydrogenase (EC 1.1.1.3)	Silicibacter TM1040 Gene: TM1040_2164: Homoserine dehydrogenase (EC 1.1.1.3)	Silicibacter pomeroyi DSS-3 Gene: SPO1734: Homoserine dehydrogenase (EC 1.1.1.3)	Roseobacter sp. MED193 Gene: MED193_08628: Homoserine dehydrogenase (EC 1.1.1.3)	Hyphomonas neptunium ATCC 15444 Gene: HNE_2310: Homoserine dehydrogenase (EC 1.1.1.3)	* Oceanicaulis alexandrii HTCC2633 Site: position = -185 score = 21.71 sequence = TATCCAGATTTGCGC... Gene: OA2633_08279: Homoserine dehydrogenase (EC 1.1.1.3)	Homoserine dehydrogenase (EC 1.1.1.3)
metX2	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633 Gene: OA2633_08274: Homoserine O-acetyltransferase (EC 2.3.1.31)	Homoserine O-acetyltransferase (EC 2.3.1.31)
metB	Rhodobacter sphaeroides 2.4.1	Paracoccus denitrificans PD1222 Gene: Pden_5069: Cystathionine gamma-synthase (EC 2.5.1.48)	Jannaschia sp. CCS1	Rhodobacterales bacterium HTCC2654	Oceanicola granulosus HTCC2516	Loktanella vestfoldensis SKA53	Oceanicola batsensis HTCC2597	Roseovarius nubinhibens ISM	Roseovarius sp. 217	Sulfitobacter sp. EE-36	Silicibacter TM1040	Silicibacter pomeroyi DSS-3	Roseobacter sp. MED193	Hyphomonas neptunium ATCC 15444	Oceanicaulis alexandrii HTCC2633 Gene: OA2633_08269: Cystathionine gamma-synthase (EC 2.5.1.48)	Cystathionine gamma-synthase (EC 2.5.1.48)

CRON 2.
metA	Rhodobacter sphaeroides 2.4.1 Gene: RSP_0010: Homoserine O-succinyltransferase (EC 2.3.1.46)	Paracoccus denitrificans PD1222 Gene: Pden_4499: Homoserine O-succinyltransferase (EC 2.3.1.46)	Jannaschia sp. CCS1 Gene: Jann_2351: Homoserine O-succinyltransferase (EC 2.3.1.46)	Rhodobacterales bacterium HTCC2654 Gene: RB2654_03524: Homoserine O-succinyltransferase (EC 2.3.1.46)	Oceanicola granulosus HTCC2516 Gene: OG2516_03103: Homoserine O-succinyltransferase (EC 2.3.1.46)	Loktanella vestfoldensis SKA53 Gene: SKA53_04518: Homoserine O-succinyltransferase (EC 2.3.1.46)	Oceanicola batsensis HTCC2597 Gene: OB2597_01912: Homoserine O-succinyltransferase (EC 2.3.1.46)	Roseovarius nubinhibens ISM Gene: ISM_16275: Homoserine O-succinyltransferase (EC 2.3.1.46)	Roseovarius sp. 217 Gene: ROS217_18627: Homoserine O-succinyltransferase (EC 2.3.1.46)	Sulfitobacter sp. EE-36 Gene: EE36_14917: Homoserine O-succinyltransferase (EC 2.3.1.46)	Silicibacter TM1040 Gene: TM1040_1379: Homoserine O-succinyltransferase (EC 2.3.1.46)	2 Silicibacter pomeroyi DSS-3 Gene: SPO3045: Homoserine O-succinyltransferase (EC 2.3.1.46) Gene: SPO1729: Homoserine O-succinyltransferase (EC 2.3.1.46)	Roseobacter sp. MED193 Gene: MED193_04721: Homoserine O-succinyltransferase (EC 2.3.1.46)	* Hyphomonas neptunium ATCC 15444 Site: position = -162 score = 82.3 sequence = AATCCTCGTCCGTGG... Gene: HNE_3283: Homoserine O-succinyltransferase (EC 2.3.1.46)	Oceanicaulis alexandrii HTCC2633	Homoserine O-succinyltransferase (EC 2.3.1.46)

CRON 3.
metY	* Rhodobacter sphaeroides 2.4.1 Site: position = -91 score = 58.98 sequence = GCAAAAGCCGTGGTG... Gene: RSP_1851: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	Paracoccus denitrificans PD1222 Gene: Pden_4298: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	* Jannaschia sp. CCS1 Site: position = -148 score = 62.22 sequence = CCAAGGGCCGTGGCG... Gene: Jann_1854: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	* Rhodobacterales bacterium HTCC2654 Site: position = -120 score = 59.55 sequence = GCGATTGCCGTGGCG... Gene: RB2654_19698: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	* Oceanicola granulosus HTCC2516 Site: position = -127 score = 61.44 sequence = CAGCGCGCATCGTGG... Gene: OG2516_07445: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	* Loktanella vestfoldensis SKA53 Site: position = -132 score = 57.68 sequence = CCAGACGCCGTGGTG... Gene: SKA53_02111: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	* Oceanicola batsensis HTCC2597 Site: position = -150 score = 41.99 sequence = AGACAGCGCGCGTGG... Gene: OB2597_07085: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	* Roseovarius nubinhibens ISM Site: position = -133 score = 51.37 sequence = ATCCACATCGTGGCG... Gene: ISM_06080: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	* Roseovarius sp. 217 Site: position = -134 score = 58.65 sequence = AATGCGCGACTGTGG... Gene: ROS217_17025: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	* Sulfitobacter sp. EE-36 Site: position = -147 score = 24.58 sequence = ACGTGGCGATTTGAT... Gene: EE36_17182: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	* Silicibacter TM1040 Site: position = -157 score = 61.56 sequence = ATCAAGACCCCGTGG... Gene: TM1040_1938: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	2 Silicibacter pomeroyi DSS-3* Gene: SPO0413: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) Site: position = -144 score = 52.14 sequence = AGGAACCACGTGGCG... Gene: SPO1351: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	* Roseobacter sp. MED193 Site: position = -135 score = 58.86 sequence = ATCAACACCGTGGCG... Gene: MED193_20939: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	Hyphomonas neptunium ATCC 15444 Gene: HNE_2672: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)	Oceanicaulis alexandrii HTCC2633	O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog SAM_alpha - Rhodobacterales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --