Regulog SAM_alpha - Rhodobacterales
| Regulator type: | RNA regulatory element |
| Name: | SAM_alpha |
| RFAM: | RF00521 |
| Regulation mode: | |
| Biological process: | Methionine biosynthesis |
| Effector: | S-adenosylmethionine |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Rhodobacterales
- By RNA motif - SAM_alpha
- By effector - S-adenosylmethionine
- By pathway - Methionine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Rhodobacter sphaeroides 2.4.1 | 1 | 1 |
| Paracoccus denitrificans PD1222 | ||
| Jannaschia sp. CCS1 | 1 | 1 |
| Rhodobacterales bacterium HTCC2654 | 1 | 1 |
| Oceanicola granulosus HTCC2516 | 1 | 1 |
| Loktanella vestfoldensis SKA53 | 1 | 1 |
| Oceanicola batsensis HTCC2597 | 1 | 1 |
| Roseovarius nubinhibens ISM | 1 | 1 |
| Roseovarius sp. 217 | 1 | 1 |
| Sulfitobacter sp. EE-36 | 1 | 1 |
| Silicibacter TM1040 | 1 | 1 |
| Silicibacter pomeroyi DSS-3 | 1 | 1 |
| Roseobacter sp. MED193 | 1 | 1 |
| Hyphomonas neptunium ATCC 15444 | 1 | 1 |
| Oceanicaulis alexandrii HTCC2633 | 3 | 1 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| hom |
Gene: RSP_0403: Homoserine dehydrogenase (EC 1.1.1.3) |
Gene: Pden_3678: Homoserine dehydrogenase (EC 1.1.1.3) |
Gene: Jann_2998: Homoserine dehydrogenase (EC 1.1.1.3) |
Gene: RB2654_21303: Homoserine dehydrogenase (EC 1.1.1.3) |
Gene: OG2516_06317: Homoserine dehydrogenase (EC 1.1.1.3) |
Gene: SKA53_01871: Homoserine dehydrogenase (EC 1.1.1.3) |
Gene: OB2597_00930: Homoserine dehydrogenase (EC 1.1.1.3) |
Gene: ISM_12920: Homoserine dehydrogenase (EC 1.1.1.3) |
Gene: ROS217_17087: Homoserine dehydrogenase (EC 1.1.1.3) |
Gene: EE36_12348: Homoserine dehydrogenase (EC 1.1.1.3) |
Gene: TM1040_2164: Homoserine dehydrogenase (EC 1.1.1.3) |
Gene: SPO1734: Homoserine dehydrogenase (EC 1.1.1.3) |
Gene: MED193_08628: Homoserine dehydrogenase (EC 1.1.1.3) |
Gene: HNE_2310: Homoserine dehydrogenase (EC 1.1.1.3) |
*
Oceanicaulis alexandrii HTCC2633 Site: position = -185 score = 21.71 sequence = TATCCAGATTTGCGC... Gene: OA2633_08279: Homoserine dehydrogenase (EC 1.1.1.3) |
Homoserine dehydrogenase (EC 1.1.1.3) |
| metX2 |
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Gene: OA2633_08274: Homoserine O-acetyltransferase (EC 2.3.1.31) |
Homoserine O-acetyltransferase (EC 2.3.1.31) |
| metB |
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Gene: Pden_5069: Cystathionine gamma-synthase (EC 2.5.1.48) |
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Gene: OA2633_08269: Cystathionine gamma-synthase (EC 2.5.1.48) |
Cystathionine gamma-synthase (EC 2.5.1.48) |
| CRON 2. | ||||||||||||||||
| metA |
Gene: RSP_0010: Homoserine O-succinyltransferase (EC 2.3.1.46) |
Gene: Pden_4499: Homoserine O-succinyltransferase (EC 2.3.1.46) |
Gene: Jann_2351: Homoserine O-succinyltransferase (EC 2.3.1.46) |
Gene: RB2654_03524: Homoserine O-succinyltransferase (EC 2.3.1.46) |
Gene: OG2516_03103: Homoserine O-succinyltransferase (EC 2.3.1.46) |
Gene: SKA53_04518: Homoserine O-succinyltransferase (EC 2.3.1.46) |
Gene: OB2597_01912: Homoserine O-succinyltransferase (EC 2.3.1.46) |
Gene: ISM_16275: Homoserine O-succinyltransferase (EC 2.3.1.46) |
Gene: ROS217_18627: Homoserine O-succinyltransferase (EC 2.3.1.46) |
Gene: EE36_14917: Homoserine O-succinyltransferase (EC 2.3.1.46) |
Gene: TM1040_1379: Homoserine O-succinyltransferase (EC 2.3.1.46) |
2
Silicibacter pomeroyi DSS-3 Gene: SPO3045: Homoserine O-succinyltransferase (EC 2.3.1.46) Gene: SPO1729: Homoserine O-succinyltransferase (EC 2.3.1.46) |
Gene: MED193_04721: Homoserine O-succinyltransferase (EC 2.3.1.46) |
*
Hyphomonas neptunium ATCC 15444 Site: position = -162 score = 82.3 sequence = AATCCTCGTCCGTGG... Gene: HNE_3283: Homoserine O-succinyltransferase (EC 2.3.1.46) |
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Homoserine O-succinyltransferase (EC 2.3.1.46) |
| CRON 3. | ||||||||||||||||
| metY |
*
Rhodobacter sphaeroides 2.4.1 Site: position = -91 score = 58.98 sequence = GCAAAAGCCGTGGTG... Gene: RSP_1851: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
Gene: Pden_4298: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
*
Jannaschia sp. CCS1 Site: position = -148 score = 62.22 sequence = CCAAGGGCCGTGGCG... Gene: Jann_1854: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
*
Rhodobacterales bacterium HTCC2654 Site: position = -120 score = 59.55 sequence = GCGATTGCCGTGGCG... Gene: RB2654_19698: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
*
Oceanicola granulosus HTCC2516 Site: position = -127 score = 61.44 sequence = CAGCGCGCATCGTGG... Gene: OG2516_07445: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
*
Loktanella vestfoldensis SKA53 Site: position = -132 score = 57.68 sequence = CCAGACGCCGTGGTG... Gene: SKA53_02111: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
*
Oceanicola batsensis HTCC2597 Site: position = -150 score = 41.99 sequence = AGACAGCGCGCGTGG... Gene: OB2597_07085: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
*
Roseovarius nubinhibens ISM Site: position = -133 score = 51.37 sequence = ATCCACATCGTGGCG... Gene: ISM_06080: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
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Roseovarius sp. 217 Site: position = -134 score = 58.65 sequence = AATGCGCGACTGTGG... Gene: ROS217_17025: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
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Sulfitobacter sp. EE-36 Site: position = -147 score = 24.58 sequence = ACGTGGCGATTTGAT... Gene: EE36_17182: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
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Silicibacter TM1040 Site: position = -157 score = 61.56 sequence = ATCAAGACCCCGTGG... Gene: TM1040_1938: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
*2
Silicibacter pomeroyi DSS-3 Gene: SPO0413: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) Site: position = -144 score = 52.14 sequence = AGGAACCACGTGGCG... Gene: SPO1351: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
*
Roseobacter sp. MED193 Site: position = -135 score = 58.86 sequence = ATCAACACCGTGGCG... Gene: MED193_20939: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
Gene: HNE_2672: O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
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O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) / O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |