Regulog NrdR - Mycobacteriaceae
| Regulator type: | Transcription factor |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Phylum: | Actinobacteria |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NrdR
- By taxonomy - Mycobacteriaceae
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Mycobacterium abscessus ATCC 19977 | 4 | 2 |
| Mycobacterium avium 104 | 4 | 2 |
| Mycobacterium flavescens PYR-GCK | 4 | 2 |
| Mycobacterium leprae TN | 4 | 2 |
| Mycobacterium marinum M | 4 | 2 |
| Mycobacterium smegmatis str. MC2 155 | 4 | 4 |
| Mycobacterium sp. JLS | 4 | 2 |
| Mycobacterium tuberculosis H37Rv | 4 | 2 |
| Mycobacterium vanbaalenii PYR-1 | 4 | 2 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| nrdF |
*
Mycobacterium abscessus ATCC 19977 Site: position = -73 score = 4.78439 sequence = CCCCTAGGGGTAGTGT Site: position = -105 score = 4.81863 sequence = CCACAACACGTTGTGT Gene: MAB_3404c: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
*
Mycobacterium avium 104 Site: position = -96 score = 5.02514 sequence = ACACAACTTCTTGTGT Site: position = -64 score = 4.56096 sequence = ACCCCAGGGGTAGTGT Gene: MAV_3913: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
*
Mycobacterium flavescens PYR-GCK Site: position = -121 score = 4.91719 sequence = ACACAACATCTCGTAT Site: position = -89 score = 4.91308 sequence = ACACCAGTTGTAGTGT Gene: Mflv_4286: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
*
Mycobacterium leprae TN Site: position = -74 score = 4.02843 sequence = ACCCCAAGGGTAGTGT Site: position = -106 score = 4.98978 sequence = ACACTACTTCTTGTGT Gene: ML1731: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
*
Mycobacterium marinum M Site: position = -87 score = 4.80462 sequence = CCCCTACGGGTAGTGT Site: position = -119 score = 5.02514 sequence = ACACAACTTCTTGTGT Gene: MMAR_1647: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
*2
Mycobacterium smegmatis str. MC2 155 Site: position = -110 score = 4.44677 sequence = CCACAACATCTCGGGG Site: position = -78 score = 4.98139 sequence = CCACCAGTTGTAGTGT Gene: MSMEG_2313: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) Site: position = -78 score = 4.98139 sequence = CCACCAGTTGTAGTGT Site: position = -110 score = 4.44677 sequence = CCACAACATCTCGGGG Gene: MSMEG_1033: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
*
Mycobacterium sp. JLS Site: position = -89 score = 4.63725 sequence = ACACAACGAGTAGTGT Site: position = -121 score = 3.97897 sequence = ACCCAATATGTGGGGT Gene: Mjls_1809: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
*
Mycobacterium tuberculosis H37Rv Site: position = -95 score = 5.02514 sequence = ACACAACTTCTTGTGT Site: position = -63 score = 4.56096 sequence = ACCCCAGGGGTAGTGT Gene: Rv3048c: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
*
Mycobacterium vanbaalenii PYR-1 Site: position = -77 score = 4.91308 sequence = ACACCAGTTGTAGTGT Site: position = -109 score = 4.95015 sequence = CCACTACATCTCGTAT Gene: Mvan_2060: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
| CRON 2. | ||||||||||
| nrdH |
*
Mycobacterium abscessus ATCC 19977 Site: position = -188 score = 5.22332 sequence = ACACTAGGTGTAGTGT Site: position = -220 score = 4.91162 sequence = TCAGAACATCTTGTAT Gene: MAB_3415c: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
*
Mycobacterium avium 104 Site: position = -264 score = 4.91162 sequence = TCAGAACATCTTGTAT Site: position = -249 score = 3.92042 sequence = TCTCGACATCTAGTGA Site: position = -232 score = 5.29164 sequence = CCACTAGGTGTAGTGT Gene: MAV_3921: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
*
Mycobacterium flavescens PYR-GCK Site: position = -204 score = 4.91162 sequence = TCAGAACATCTTGTAT Site: position = -172 score = 5.22332 sequence = ACACTAGGTGTAGTGT Gene: Mflv_4307: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
*
Mycobacterium leprae TN Site: position = -252 score = 4.91162 sequence = TCAGAACATCTTGTAT Site: position = -220 score = 5.29164 sequence = CCACTAGGTGTAGTGT Gene: ML1736: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
*
Mycobacterium marinum M Site: position = -269 score = 4.73764 sequence = TCCGAACATCTTGTAT Site: position = -237 score = 5.11766 sequence = CCCCTAGGTGTAGTGT Gene: MMAR_1640: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
*2
Mycobacterium smegmatis str. MC2 155 Site: position = -261 score = 4.91162 sequence = TCAGAACATCTTGTAT Site: position = -229 score = 5.29164 sequence = CCACTAGGTGTAGTGT Gene: MSMEG_1017: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib Site: position = -261 score = 4.91162 sequence = TCAGAACATCTTGTAT Site: position = -229 score = 5.29164 sequence = CCACTAGGTGTAGTGT Gene: MSMEG_2297: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
*
Mycobacterium sp. JLS Site: position = -260 score = 4.91162 sequence = TCAGAACATCTTGTAT Site: position = -228 score = 5.29164 sequence = CCACTAGGTGTAGTGT Gene: Mjls_1796: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
*
Mycobacterium tuberculosis H37Rv Site: position = -278 score = 4.91162 sequence = TCAGAACATCTTGTAT Site: position = -232 score = 5.11766 sequence = CCCCTAGGTGTAGTGT Gene: Rv3053c: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
*
Mycobacterium vanbaalenii PYR-1 Site: position = -247 score = 4.57835 sequence = TCAGAACATCTTGTAG Site: position = -215 score = 5.22332 sequence = ACACTAGGTGTAGTGT Site: position = -182 score = 4.52647 sequence = CCCCAAGATGTAGGGG Gene: Mvan_2040: Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib |
| nrdI |
Gene: MAB_3414c: Ribonucleotide reduction protein NrdI |
Gene: MAV_3920: Ribonucleotide reduction protein NrdI |
Gene: Mflv_4306: Ribonucleotide reduction protein NrdI |
Gene: ML1735: Ribonucleotide reduction protein NrdI |
Gene: MMAR_1641: Ribonucleotide reduction protein NrdI |
|
Gene: Mjls_1797: Ribonucleotide reduction protein NrdI |
Gene: Rv3052c: Ribonucleotide reduction protein NrdI |
Gene: Mvan_2041: Ribonucleotide reduction protein NrdI |
Ribonucleotide reduction protein NrdI |
| nrdE |
Gene: MAB_3413c: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: MAV_3919: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: Mflv_4305: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: ML1734: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: MMAR_1642: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
2
Mycobacterium smegmatis str. MC2 155 Gene: MSMEG_1019: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) Gene: MSMEG_2299: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: Mjls_1798: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
*
Mycobacterium tuberculosis H37Rv Site: position = -202 score = 3.83799 sequence = CCCGAAAATGTAGCGT Gene: Rv3051c: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Gene: Mvan_2042: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |