Regulog TPP - Pasteurellales
| Regulator type: | RNA regulatory element |
| Name: | TPP |
| RFAM: | RF00059 |
| Regulation mode: | |
| Biological process: | Thiamine biosynthesis |
| Effector: | Thiamine pyrophosphate |
| Phylum: | Proteobacteria |
Member of regulog collections
- By taxonomy - Pasteurellales
- By RNA motif - TPP
- By effector - Thiamine pyrophosphate
- By pathway - Thiamine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Haemophilus influenzae Rd KW20 | 11 | 3 |
| Aggregatibacter aphrophilus NJ8700 | 6 | 3 |
| Pasteurella multocida subsp. multocida str. Pm70 | 7 | 2 |
| Mannheimia succiniciproducens MBEL55E | 5 | 3 |
| Actinobacillus succinogenes 130Z | 7 | 3 |
| Haemophilus somnus 2336 | 3 | 1 |
| Actinobacillus pleuropneumoniae serovar 7 str. AP76 | 15 | 2 |
| Haemophilus ducreyi 35000HP | 1 | 1 |
| Haemophilus parasuis SH0165 | 4 | 2 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| thiZ |
*
Haemophilus influenzae Rd KW20 Site: position = -161 score = 55.76 sequence = GTTTTTAGTCGGGGT... Gene: HI0354: Hydroxymethylpyrimidine ABC transporter, ATPase component |
|
*
Pasteurella multocida subsp. multocida str. Pm70 Site: position = -185 score = 62.97 sequence = TGCACTTTAGTCGGG... Gene: PM1266: Hydroxymethylpyrimidine ABC transporter, ATPase component |
|
|
|
*
Actinobacillus pleuropneumoniae serovar 7 str. AP76 Site: position = -401 score = 69.36 sequence = ATTTTTAGTCGGGGT... Gene: APP7_0569: Hydroxymethylpyrimidine ABC transporter, ATPase component |
|
|
Hydroxymethylpyrimidine ABC transporter, ATPase component |
| thiX |
Gene: HI0355: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
|
Gene: PM1265: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
|
|
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Gene: APP7_0570: Hydroxymethylpyrimidine ABC transporter, transmembrane component |
|
|
Hydroxymethylpyrimidine ABC transporter, transmembrane component |
| thiF |
|
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|
|
|
|
2
Actinobacillus pleuropneumoniae serovar 7 str. AP76 Gene: APP7_0571: predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis Gene: APP7_0572: predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis |
|
|
predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis |
| thiS |
|
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Gene: APP7_0573: thiamine biosynthesis protein ThiS |
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thiamine biosynthesis protein ThiS |
| thiG |
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|
|
2
Actinobacillus pleuropneumoniae serovar 7 str. AP76 Gene: APP7_0575: Thiazole biosynthesis protein thiG Gene: APP7_0574: Thiazole biosynthesis protein thiG |
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Thiazole biosynthesis protein thiG |
| thiH |
|
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Gene: APP7_0576: thiazole biosynthesis protein ThiH |
|
|
thiazole biosynthesis protein ThiH |
| tenA |
Gene: HI0358: Thiaminase II (EC 3.5.99.2) |
|
Gene: PM1264: Thiaminase II (EC 3.5.99.2) |
|
|
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Gene: APP7_0577: Thiaminase II (EC 3.5.99.2) |
|
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Thiaminase II (EC 3.5.99.2) |
| thiY |
Gene: HI0357: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
|
Gene: PM1263: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
|
|
|
2
Actinobacillus pleuropneumoniae serovar 7 str. AP76 Gene: APP7_0578: Hydroxymethylpyrimidine ABC transporter, substrate-binding component Gene: APP7_0579: Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
|
|
Hydroxymethylpyrimidine ABC transporter, substrate-binding component |
| thiD |
Gene: HI0416: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*
Aggregatibacter aphrophilus NJ8700 Site: position = -210 score = 58.49 sequence = GTTATTAGTCGGGGT... Gene: NT05HA_0532: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: PM1261: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
*
Mannheimia succiniciproducens MBEL55E Site: position = -234 score = 64.9 sequence = TCCTCATTAGTCGGG... Gene: MS0677: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Gene: Asuc_1507: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
|
2
Actinobacillus pleuropneumoniae serovar 7 str. AP76 Gene: APP7_0580: Phosphomethylpyrimidine kinase (EC 2.7.4.7) Gene: APP7_0581: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
|
Gene: HAPS_1840: Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
Phosphomethylpyrimidine kinase (EC 2.7.4.7) |
| thiE |
Gene: HI0417: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
*
Aggregatibacter aphrophilus NJ8700 Site: position = -167 score = 57.15 sequence = TTCGCTTGTCGGAGT... Gene: NT05HA_1780: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: PM1260: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: MS0676: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Gene: Asuc_1508: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
|
Gene: APP7_0582: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
|
Gene: HAPS_1839: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
| thiB |
*
Haemophilus influenzae Rd KW20 Site: position = -139 score = 57.87 sequence = AAGCCTAGTCGGGGT... Gene: HI1019: Thiamin ABC transporter, substrate-binding component |
Gene: NT05HA_0533: Thiamin ABC transporter, substrate-binding component |
*
Pasteurella multocida subsp. multocida str. Pm70 Site: position = -129 score = 62.12 sequence = ACTCTTAGTCGGGGT... Gene: PM0376: Thiamin ABC transporter, substrate-binding component |
*
Mannheimia succiniciproducens MBEL55E Site: position = -136 score = 60.91 sequence = TCTGTTCTCAACGGG... Gene: MS1526: Thiamin ABC transporter, substrate-binding component |
*
Actinobacillus succinogenes 130Z Site: position = -210 score = 43.16 sequence = GGTTCTCATCGGGGT... Gene: Asuc_1129: Thiamin ABC transporter, substrate-binding component |
*
Haemophilus somnus 2336 Site: position = -156 score = 64.76 sequence = TCCGACTTAGTCGGG... Gene: HSM_1488: Thiamin ABC transporter, substrate-binding component |
*
Actinobacillus pleuropneumoniae serovar 7 str. AP76 Site: position = -164 score = 62.15 sequence = CGTTCTCATTGGGGG... Gene: APP7_0176: Thiamin ABC transporter, substrate-binding component |
*
Haemophilus ducreyi 35000HP Site: position = -154 score = 62.57 sequence = TGTTCTCATTGGGGT... Gene: HD0601: Thiamin ABC transporter, substrate-binding component |
*
Haemophilus parasuis SH0165 Site: position = -146 score = 63.36 sequence = TGTTCTCATCGGGGT... Gene: HAPS_1254: Thiamin ABC transporter, substrate-binding component |
Thiamin ABC transporter, substrate-binding component |
| thiP |
Gene: HI1020: Thiamin ABC transporter, transmembrane component |
Gene: NT05HA_0534: Thiamin ABC transporter, transmembrane component |
Gene: PM0377: Thiamin ABC transporter, transmembrane component |
Gene: MS1525: Thiamin ABC transporter, transmembrane component |
Gene: Asuc_1130: Thiamin ABC transporter, transmembrane component |
Gene: HSM_1487: Thiamin ABC transporter, transmembrane component |
Gene: APP7_1372: Thiamin ABC transporter, transmembrane component |
Gene: HD0230: Thiamin ABC transporter, transmembrane component |
Gene: HAPS_1087: Thiamin ABC transporter, transmembrane component |
Thiamin ABC transporter, transmembrane component |
| thiQ |
Gene: HI1021: Thiamin ABC transporter, ATPase component |
Gene: NT05HA_0535: Thiamin ABC transporter, ATPase component |
Gene: PM0378: Thiamin ABC transporter, ATPase component |
Gene: MS1524: Thiamin ABC transporter, ATPase component |
Gene: Asuc_1131: Thiamin ABC transporter, ATPase component |
Gene: HSM_1486: Thiamin ABC transporter, ATPase component |
Gene: APP7_1371: Thiamin ABC transporter, ATPase component |
Gene: HD0231: Thiamin ABC transporter, ATPase component |
Gene: HAPS_1361: Thiamin ABC transporter, ATPase component |
Thiamin ABC transporter, ATPase component |
| thiM |
*
Haemophilus influenzae Rd KW20 Site: position = -211 score = 54.95 sequence = ACTTTTAGTCGGGGT... Gene: HI0415: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
|
Gene: PM1262: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
|
*
Actinobacillus succinogenes 130Z Site: position = -201 score = 66.11 sequence = CCCATTAGTCGGGGT... Gene: Asuc_1506: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
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*
Haemophilus parasuis SH0165 Site: position = -262 score = 69.61 sequence = GACATTTAAGTCGGG... Gene: HAPS_1841: Hydroxyethylthiazole kinase (EC 2.7.1.50) |
Hydroxyethylthiazole kinase (EC 2.7.1.50) |
| thiU |
2
Haemophilus influenzae Rd KW20 Gene: HI0281: Predicted thiazole transporter ThiU Gene: HI0418: Predicted thiazole transporter ThiU |
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Gene: PM1259: Predicted thiazole transporter ThiU |
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Gene: HAPS_1072: Predicted thiazole transporter ThiU |
Predicted thiazole transporter ThiU |
| CRON 2. | ||||||||||
| afuA |
|
*
Aggregatibacter aphrophilus NJ8700 Site: position = -188 score = 56.48 sequence = CCCGTTAGTCGGGGT... Gene: NT05HA_1226: ABC transporter substrate-binding protein |
|
*
Mannheimia succiniciproducens MBEL55E Site: position = -272 score = 59.51 sequence = GCCGTTAGTCGGGGT... Gene: MS1370: ABC transporter substrate-binding protein |
*
Actinobacillus succinogenes 130Z Site: position = -150 score = 60.11 sequence = TTCCCGTTAGTCGGG... Gene: Asuc_1267: ABC transporter substrate-binding protein |
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ABC transporter substrate-binding protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |