Regulog Glycine - Mycobacteriaceae
| Regulator type: | RNA regulatory element |
| Name: | Glycine |
| RFAM: | RF00504 |
| Regulation mode: | |
| Biological process: | Glycine metabolism |
| Effector: | Glycine |
| Phylum: | Actinobacteria |
Member of regulog collections
- By taxonomy - Mycobacteriaceae
- By RNA motif - Glycine
- By effector - Glycine
- By pathway - Glycine metabolism
| Genome | Genes | Operons |
|---|---|---|
| Mycobacterium tuberculosis H37Rv | 3 | 2 |
| Mycobacterium leprae TN | ||
| Mycobacterium marinum M | 6 | 2 |
| Mycobacterium avium 104 | 1 | 1 |
| Mycobacterium sp. JLS | 1 | 1 |
| Mycobacterium vanbaalenii PYR-1 | 1 | 1 |
| Mycobacterium flavescens PYR-GCK | 1 | 1 |
| Mycobacterium smegmatis str. MC2 155 | 1 | 1 |
| Mycobacterium abscessus ATCC 19977 | 1 | 1 |
| Genes | Function | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||
| gcvB |
*
Mycobacterium tuberculosis H37Rv Site: position = -167 score = 38.92 sequence = ACGATGCCTCTGGAA... Site: position = -263 score = 53.68 sequence = GCTCTAGTGCGGGAG... Gene: Rv1832: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Gene: ML2072: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
*2
Mycobacterium marinum M Site: position = -289 score = 55.81 sequence = GTTCTCGTGCGGGAG... Site: position = -189 score = 27.75 sequence = TGCCTCTGGAAAGCG... Gene: MMAR_2708: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) Site: position = -253 score = 55.66 sequence = TTGACGCGACGCGGG... Site: position = -165 score = 36.13 sequence = CCGAGGCGACTCTGG... Gene: MMAR_0211: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
*
Mycobacterium avium 104 Site: position = -275 score = 52.02 sequence = TCGCATTCGAGCGGG... Site: position = -180 score = 32.2 sequence = ACATGATGCCTCTGG... Gene: MAV_2884: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
*
Mycobacterium sp. JLS Site: position = -267 score = 45.07 sequence = TCGCCCGTGTGCGGG... Site: position = -170 score = 23.75 sequence = CCTCGATGCCTCTGG... Gene: Mjls_2871: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
*
Mycobacterium vanbaalenii PYR-1 Site: position = -141 score = 34.29 sequence = CCCCGATGCCTCTGG... Site: position = -238 score = 46.72 sequence = ATCGCCCTGTGCGGG... Gene: Mvan_3131: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
*
Mycobacterium flavescens PYR-GCK Site: position = -160 score = 22.43 sequence = CCCCGATGCCTCTGG... Site: position = -257 score = 43.26 sequence = TCGCCCTTGCGCGGG... Gene: Mflv_3398: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
*
Mycobacterium smegmatis str. MC2 155 Site: position = -284 score = 50.3 sequence = ATCGACCTGTGCGGG... Site: position = -187 score = 31.42 sequence = CCACGATGCCTCTGG... Gene: MSMEG_3642: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
*
Mycobacterium abscessus ATCC 19977 Site: position = -12 score = 44.71 sequence = CGGGAGAGTGTCATG... Gene: MAB_2407: Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) |
| gcvT |
Gene: Rv2211c: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
Gene: ML0865: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
2
Mycobacterium marinum M Gene: MMAR_3256: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) Gene: MMAR_0210: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
Gene: MAV_2280: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
Gene: Mjls_3320: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
Gene: Mvan_3574: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
Gene: Mflv_2939: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
Gene: MSMEG_4278: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
Gene: MAB_1949: Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) |
| gcvH |
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Gene: MMAR_0209: Glycine cleavage system H protein |
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Glycine cleavage system H protein |
| glyA2 |
*
Mycobacterium tuberculosis H37Rv Site: position = -399 score = 50.49 sequence = CTGACGCGATGTGGG... Site: position = -312 score = 31.29 sequence = CCGAGGCAACTCTGG... Gene: Rv0070c: Serine hydroxymethyltransferase (EC 2.1.2.1) |
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Gene: MMAR_0208: Serine hydroxymethyltransferase (EC 2.1.2.1) |
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Serine hydroxymethyltransferase (EC 2.1.2.1) |
| sdaA |
Gene: Rv0069c: L-serine dehydratase (EC 4.3.1.17) |
Gene: ML1755: L-serine dehydratase (EC 4.3.1.17) |
Gene: MMAR_0207: L-serine dehydratase (EC 4.3.1.17) |
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Gene: Mflv_0819: L-serine dehydratase (EC 4.3.1.17) |
Gene: MSMEG_3440: L-serine dehydratase (EC 4.3.1.17) |
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L-serine dehydratase (EC 4.3.1.17) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |