Regulog T-box(Val) - Deinococcus-Thermus
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Val-tRNA |
| Phylum: | Deinococcus-Thermus |
Member of regulog collections
- By taxonomy - Deinococcus-Thermus
- By RNA motif - T-box
- By effector - Val-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Deinococcus radiodurans R1 | 2 | 1 |
| Deinococcus geothermalis DSM 11300 | ||
| Deinococcus deserti VCD115 | 2 | 1 |
| Thermus thermophilus HB27 | ||
| Thermus aquaticus Y51MC23 |
| Genes | Function | |||||
|---|---|---|---|---|---|---|
| CRON 1. | ||||||
| DR0149 |
*
Deinococcus radiodurans R1 Site: position = -154 score = 62.58 sequence = GAGGGCAGCAGTGAC... Gene: DR0149: Nudix dNTPase DR0149 (EC 3.6.1.-) |
|
*
Deinococcus deserti VCD115 Site: position = -342 score = 48.09 sequence = CCTGAGCAGTGACCG... Gene: Deide_06710: Nudix dNTPase DR0149 (EC 3.6.1.-) |
|
|
Nudix dNTPase DR0149 (EC 3.6.1.-) |
| valS |
Gene: DR0148: Valyl-tRNA synthetase (EC 6.1.1.9) |
Gene: Dgeo_1951: Valyl-tRNA synthetase (EC 6.1.1.9) |
Gene: Deide_06720: Valyl-tRNA synthetase (EC 6.1.1.9) |
Gene: TTC0805: Valyl-tRNA synthetase (EC 6.1.1.9) |
Gene: TaqDRAFT_3518: Valyl-tRNA synthetase (EC 6.1.1.9) |
Valyl-tRNA synthetase (EC 6.1.1.9) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |