Regulog GEMM_RNA_motif - Deinococcus-Thermus

Member of regulog collections

Statistics of regulated genes
Genome	Genes	Operons
Deinococcus radiodurans R1
Deinococcus geothermalis DSM 11300
Deinococcus deserti VCD115	3	3
Thermus thermophilus HB27
Thermus aquaticus Y51MC23

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes						Function

CRON 1.
licB	Deinococcus radiodurans R1	Deinococcus geothermalis DSM 11300	2 Deinococcus deserti VCD115* Site: position = -205 score = 46.04 sequence = AAACCGAAAAAGGCA... Gene: Deide_1p01250: Beta-glucanase (putative lichenase) (3.2.1.73) Site: position = -257 score = 46.04 sequence = AAACCGAAAAAGGCA... Gene: Deide_1p00130: Beta-glucanase (putative lichenase) (3.2.1.73)	Thermus thermophilus HB27	Thermus aquaticus Y51MC23	Beta-glucanase (putative lichenase) (3.2.1.73)

CRON 2.
Deide_1p01370	Deinococcus radiodurans R1	Deinococcus geothermalis DSM 11300	* Deinococcus deserti VCD115 Site: position = -91 score = 47.61 sequence = ACACCGAAAAAGGCA... Gene: Deide_1p01370: Pectin lyase fold protein	Thermus thermophilus HB27	Thermus aquaticus Y51MC23	Pectin lyase fold protein

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --