Regulog GEMM_RNA_motif - Deinococcus-Thermus
| Regulator type: | RNA regulatory element |
| Name: | GEMM_RNA_motif |
| RFAM: | RF01051 |
| Regulation mode: | |
| Biological process: | Second messenger response |
| Effector: | Cyclic diguanylate |
| Phylum: | Deinococcus-Thermus |
Member of regulog collections
- By taxonomy - Deinococcus-Thermus
- By RNA motif - GEMM_RNA_motif
- By effector - Cyclic diguanylate
- By pathway - Second messenger response
| Genome | Genes | Operons |
|---|---|---|
| Deinococcus radiodurans R1 | ||
| Deinococcus geothermalis DSM 11300 | ||
| Deinococcus deserti VCD115 | 3 | 3 |
| Thermus thermophilus HB27 | ||
| Thermus aquaticus Y51MC23 |
| Genes | Function | |||||
|---|---|---|---|---|---|---|
| CRON 1. | ||||||
| licB |
|
|
*2
Deinococcus deserti VCD115 Site: position = -205 score = 46.04 sequence = AAACCGAAAAAGGCA... Gene: Deide_1p01250: Beta-glucanase (putative lichenase) (3.2.1.73) Site: position = -257 score = 46.04 sequence = AAACCGAAAAAGGCA... Gene: Deide_1p00130: Beta-glucanase (putative lichenase) (3.2.1.73) |
|
|
Beta-glucanase (putative lichenase) (3.2.1.73) |
| CRON 2. | ||||||
| Deide_1p01370 |
|
|
*
Deinococcus deserti VCD115 Site: position = -91 score = 47.61 sequence = ACACCGAAAAAGGCA... Gene: Deide_1p01370: Pectin lyase fold protein |
|
|
Pectin lyase fold protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |