Regulog SAM - Deinococcus-Thermus
| Regulator type: | RNA regulatory element |
| Name: | SAM |
| RFAM: | RF00162 |
| Regulation mode: | |
| Biological process: | Methionine biosynthesis |
| Effector: | S-adenosylmethionine |
| Phylum: | Deinococcus-Thermus |
Member of regulog collections
- By taxonomy - Deinococcus-Thermus
- By RNA motif - SAM
- By effector - S-adenosylmethionine
- By pathway - Methionine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Deinococcus radiodurans R1 | 6 | 2 |
| Deinococcus geothermalis DSM 11300 | 4 | 2 |
| Deinococcus deserti VCD115 | 7 | 3 |
| Thermus thermophilus HB27 | 2 | 1 |
| Thermus aquaticus Y51MC23 | 2 | 1 |
| Genes | Function | |||||
|---|---|---|---|---|---|---|
| CRON 1. | ||||||
| metY |
*
Deinococcus radiodurans R1 Site: position = 151 score = 28.1 sequence = CACCCACTTCAGAGC... Gene: DR0873: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) |
*
Deinococcus geothermalis DSM 11300 Site: position = -243 score = 51.06 sequence = GACCTCATCCAGAGC... Gene: Dgeo_0518: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) |
*
Deinococcus deserti VCD115 Site: position = -233 score = 35.94 sequence = AACCCACTTCAGAGC... Gene: Deide_16040: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) |
*
Thermus thermophilus HB27 Site: position = -275 score = 49.32 sequence = TCTCTTATCCAGAGC... Gene: TTC0408: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) |
*
Thermus aquaticus Y51MC23 Site: position = -242 score = 56.07 sequence = TCTTATCCAGAGCGG... Gene: TaqDRAFT_5358: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) |
O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) |
| metX |
Gene: DR0872: Homoserine O-acetyltransferase (EC 2.3.1.31) |
Gene: Dgeo_0517: Homoserine O-acetyltransferase (EC 2.3.1.31) |
Gene: Deide_16030: Homoserine O-acetyltransferase (EC 2.3.1.31) |
Gene: TTC0407: Homoserine O-acetyltransferase (EC 2.3.1.31) |
Gene: TaqDRAFT_5359: Homoserine O-acetyltransferase (EC 2.3.1.31) |
Homoserine O-acetyltransferase (EC 2.3.1.31) |
| CRON 2. | ||||||
| metN |
*
Deinococcus radiodurans R1 Site: position = -264 score = 30.16 sequence = CTTTATCCAGAGTCG... Gene: DR1356: Methionine ABC transporter ATP-binding protein |
|
*
Deinococcus deserti VCD115 Site: position = -261 score = 42.22 sequence = ACCTTTATCCAGAGC... Gene: Deide_22360: Methionine ABC transporter ATP-binding protein |
|
|
Methionine ABC transporter ATP-binding protein |
| metI |
Gene: DR1357: Methionine ABC transporter permease protein |
|
Gene: Deide_22350: Methionine ABC transporter permease protein |
|
|
Methionine ABC transporter permease protein |
| metQ |
2
Deinococcus radiodurans R1 Gene: DR1358: Methionine ABC transporter substrate-binding protein Gene: DR1359: Methionine ABC transporter substrate-binding protein |
|
Gene: Deide_22340: Methionine ABC transporter substrate-binding protein |
|
|
Methionine ABC transporter substrate-binding protein |
| CRON 3. | ||||||
| metH |
Gene: DR0966: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
*
Deinococcus geothermalis DSM 11300 Site: position = -214 score = 21.61 sequence = GGTCATCCTGAGCGC... Gene: Dgeo_1336: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
*
Deinococcus deserti VCD115 Site: position = -274 score = 23.74 sequence = ACGGTCATCCAGAGA... Gene: Deide_11120: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: TTC0253: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
Gene: TaqDRAFT_5403: 5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
5-methyltetrahydrofolate--homocysteine methyltransferase (EC 2.1.1.13) |
| metF |
Gene: DR0968: 5,10-methylenetetrahydrofolate reductase-related protein |
Gene: Dgeo_1337: 5,10-methylenetetrahydrofolate reductase-related protein |
Gene: Deide_11110: 5,10-methylenetetrahydrofolate reductase-related protein |
|
|
5,10-methylenetetrahydrofolate reductase-related protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |