Regulog FMN - Deinococcus-Thermus
| Regulator type: | RNA regulatory element |
| Name: | FMN |
| RFAM: | RF00050 |
| Regulation mode: | |
| Biological process: | Riboflavin biosynthesis |
| Effector: | Flavin mononucleotide |
| Phylum: | Deinococcus-Thermus |
Member of regulog collections
- By taxonomy - Deinococcus-Thermus
- By RNA motif - FMN
- By effector - Flavin mononucleotide
- By pathway - Riboflavin biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Deinococcus radiodurans R1 | 4 | 1 |
| Deinococcus geothermalis DSM 11300 | 4 | 1 |
| Deinococcus deserti VCD115 | 1 | 1 |
| Thermus thermophilus HB27 | 3 | 1 |
| Thermus aquaticus Y51MC23 | 3 | 1 |
| Genes | Function | |||||
|---|---|---|---|---|---|---|
| CRON 1. | ||||||
| ribD |
*
Deinococcus radiodurans R1 Site: position = -184 score = 78.29 sequence = ACCTCTTTCGGGGCG... Gene: DR0153: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
*
Deinococcus geothermalis DSM 11300 Site: position = -188 score = 87.46 sequence = GCTTCCTTCGGGGCG... Gene: Dgeo_0300: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
*
Deinococcus deserti VCD115 Site: position = -306 score = 27.56 sequence = CAGCTTCCTTCGGGG... Gene: Deide_02270: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
*
Thermus thermophilus HB27 Site: position = -126 score = 98.53 sequence = GCACCTCCTTCGGGG... Gene: TTC0699: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
*
Thermus aquaticus Y51MC23 Site: position = -122 score = 92.98 sequence = ACCTCCTTCGGGGCG... Gene: TaqDRAFT_3862: Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26) / 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC 1.1.1.193) |
| ribE |
Gene: DR0154: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Gene: Dgeo_0301: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Gene: Deide_02260: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Gene: TTC0698: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Gene: TaqDRAFT_3863: Riboflavin synthase alpha chain (EC 2.5.1.9) |
Riboflavin synthase alpha chain (EC 2.5.1.9) |
| ribBA |
Gene: DR0155: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
Gene: Dgeo_0302: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
Gene: Deide_02250: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
Gene: TTC0697: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
Gene: TaqDRAFT_3864: 3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
3,4-dihydroxy-2-butanone 4-phosphate synthase / GTP cyclohydrolase II (EC 3.5.4.25) |
| ribH |
Gene: DR0156: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: Dgeo_0303: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Gene: Deide_02240: 6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
|
|
6,7-dimethyl-8-ribityllumazine synthase (EC 2.5.1.9) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |