Regulog PipR - Streptococcaceae

Properties
Regulator type:	Transcription factor
Regulator family:	TetR
Regulation mode:
Biological process:	Phage infection protein
Effector:
Phylum:	Firmicutes
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 48 sites [see more]

Member of regulog collections

By taxonomy - Streptococcaceae
By TF family - TetR
By pathway - Phage infection protein

Statistics of regulated genes
Genome	Genes	Operons
Lactococcus lactis subsp. cremoris SK11	1	1
Lactococcus lactis subsp. lactis Il1403	2	2
Streptococcus agalactiae 2603V/R	2	2
Streptococcus dysgalactiae subsp. equisimilis GGS_124	2	2
Streptococcus equi subsp. zooepidemicus MGCS10565	2	2
Streptococcus gallolyticus UCN34	2	2
Streptococcus gordonii str. Challis substr. CH1	2	2
Streptococcus mitis B6	2	2
Streptococcus mutans UA159	2	2
Streptococcus pneumoniae TIGR4	2	2
Streptococcus pyogenes M1 GAS	2	2
Streptococcus sanguinis SK36	1	1
Streptococcus suis 05ZYH33	2	2
Streptococcus thermophilus CNRZ1066	2	2
Streptococcus uberis 0140J	2	2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
pip	Lactococcus lactis subsp. cremoris SK11 Gene: LACR_0959: Phage infection protein	* Lactococcus lactis subsp. lactis Il1403 Site: position = -34 score = 5.24621 sequence = TTTGGACGTATTGTCCATA Site: position = -113 score = 4.42657 sequence = ATTTAAAAATCTGTCCAAA Gene: L103741: Phage infection protein	* Streptococcus agalactiae 2603V/R Site: position = -31 score = 5.37788 sequence = AATGAACAATATGTCCAAA Site: position = -108 score = 5.90568 sequence = TTTAAACACAGTGTCCAAA Gene: SAG2134: Phage infection protein	* Streptococcus dysgalactiae subsp. equisimilis GGS_124 Site: position = -89 score = 6.21299 sequence = TTTAGACATAATGTCCAAA Gene: SDEG_2115: Phage infection protein	* Streptococcus equi subsp. zooepidemicus MGCS10565 Site: position = -32 score = 5.4234 sequence = TTTGAACAGTATGTCTATT Gene: Sez_1916: Phage infection protein	* Streptococcus gallolyticus UCN34 Site: position = -110 score = 6.01524 sequence = TTTAGACAGAGTGTCCAAA Site: position = -31 score = 5.85059 sequence = TTTGAACACTGTGTCCAAA Gene: GALLO_2230: Phage infection protein	* Streptococcus gordonii str. Challis substr. CH1 Site: position = -111 score = 5.38951 sequence = TTTGCACAGTATGTCCAAT Site: position = -34 score = 5.84541 sequence = TTTAGACATTATGTATAAT Gene: SGO_0091: Phage infection protein	* Streptococcus mitis B6 Site: position = -108 score = 5.46609 sequence = ATTAGACCATATGTCTAAA Site: position = -31 score = 5.91389 sequence = TTTAGACAATATGTTTAAA Gene: smi_2079: Phage infection protein	* Streptococcus mutans UA159 Site: position = -31 score = 5.85284 sequence = TTTAGACAGAATGTATAAA Site: position = -108 score = 5.75121 sequence = ATTATACACAGTGTCTAAA Gene: SMU.2133c: Phage infection protein	* Streptococcus pneumoniae TIGR4 Site: position = -159 score = 5.46609 sequence = ATTAGACTATATGTCTAAA Site: position = -82 score = 5.91389 sequence = TTTAGACAATATGTTTAAA Gene: SP_2233: Phage infection protein	* Streptococcus pyogenes M1 GAS Site: position = -31 score = 5.36831 sequence = TTTGAACAGTATGTCCATT Site: position = -110 score = 6.21299 sequence = TTTAGACATAATGTCCAAA Gene: SPy2176: Phage infection protein	* Streptococcus sanguinis SK36 Site: position = -110 score = 4.90468 sequence = ATTAGACACGGTGTCCAGT Site: position = -33 score = 5.69612 sequence = TTTGGACACTGTGTATAAT Gene: SSA_2343: Phage infection protein	* Streptococcus suis 05ZYH33 Site: position = -60 score = 6.17388 sequence = TTTAGACACAGTGTCTAAA Gene: SSU05_0261: Phage infection protein	* Streptococcus thermophilus CNRZ1066 Site: position = -107 score = 5.25254 sequence = TTTATATAATGTGTCCAAA Site: position = -29 score = 5.16983 sequence = AATATACACGATGTCTAAA Gene: str1993: Phage infection protein	* Streptococcus uberis 0140J Site: position = -111 score = 5.92183 sequence = ATTAGACAATGTGTCTAAA Site: position = -32 score = 4.81254 sequence = TTTATAAAGAATGTCCATT Gene: SUB1815: Phage infection protein	Phage infection protein

CRON 2.
pipR	* Lactococcus lactis subsp. cremoris SK11 Site: position = -146 score = 5.3402 sequence = TATGGACACAACGTCCAAA Gene: LACR_0956: Transcriptional regulator, TetR family	* Lactococcus lactis subsp. lactis Il1403 Site: position = -148 score = 5.24621 sequence = TATGGACAATACGTCCAAA Gene: L103086: Transcriptional regulator, TetR family	* Streptococcus agalactiae 2603V/R Site: position = -126 score = 5.37788 sequence = TTTGGACATATTGTTCATT Site: position = -49 score = 5.90568 sequence = TTTGGACACTGTGTTTAAA Gene: SAG2135: Transcriptional regulator, TetR family	* Streptococcus dysgalactiae subsp. equisimilis GGS_124 Site: position = -43 score = 6.21299 sequence = TTTGGACATTATGTCTAAA Gene: SDEG_2116: Transcriptional regulator, TetR family	* Streptococcus equi subsp. zooepidemicus MGCS10565 Site: position = -49 score = 5.4234 sequence = AATAGACATACTGTTCAAA Gene: Sez_1917: Transcriptional regulator, TetR family	* Streptococcus gallolyticus UCN34 Site: position = -119 score = 5.85059 sequence = TTTGGACACAGTGTTCAAA Site: position = -40 score = 6.01524 sequence = TTTGGACACTCTGTCTAAA Gene: GALLO_2231: Transcriptional regulator, TetR family	* Streptococcus gordonii str. Challis substr. CH1 Site: position = -41 score = 5.38951 sequence = ATTGGACATACTGTGCAAA Site: position = -118 score = 5.84541 sequence = ATTATACATAATGTCTAAA Gene: SGO_0090: Transcriptional regulator, TetR family	* Streptococcus mitis B6 Site: position = -38 score = 5.46609 sequence = TTTAGACATATGGTCTAAT Site: position = -115 score = 5.91389 sequence = TTTAAACATATTGTCTAAA Gene: smi_2080: Transcriptional regulator, TetR family	* Streptococcus mutans UA159 Site: position = -119 score = 5.85284 sequence = TTTATACATTCTGTCTAAA Site: position = -42 score = 5.75121 sequence = TTTAGACACTGTGTATAAT Gene: SMU.2134: Transcriptional regulator, TetR family	* Streptococcus pneumoniae TIGR4 Site: position = -38 score = 5.46609 sequence = TTTAGACATATAGTCTAAT Site: position = -115 score = 5.91389 sequence = TTTAAACATATTGTCTAAA Gene: SP_2234: Transcriptional regulator, TetR family	* Streptococcus pyogenes M1 GAS Site: position = -43 score = 6.21299 sequence = TTTGGACATTATGTCTAAA Site: position = -122 score = 5.36831 sequence = AATGGACATACTGTTCAAA Gene: SPy2177: Transcriptional regulator, TetR family	Streptococcus sanguinis SK36 Gene: SSA_2345: Transcriptional regulator, TetR family	* Streptococcus suis 05ZYH33 Site: position = -39 score = 6.17388 sequence = TTTAGACACTGTGTCTAAA Gene: SSU05_0260: Transcriptional regulator, TetR family	* Streptococcus thermophilus CNRZ1066 Site: position = -118 score = 5.16983 sequence = TTTAGACATCGTGTATATT Site: position = -40 score = 5.25254 sequence = TTTGGACACATTATATAAA Gene: str1995: Transcriptional regulator, TetR family	* Streptococcus uberis 0140J Site: position = -117 score = 4.81254 sequence = AATGGACATTCTTTATAAA Site: position = -38 score = 5.92183 sequence = TTTAGACACATTGTCTAAT Gene: SUB1816: Transcriptional regulator, TetR family	Transcriptional regulator, TetR family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog PipR - Streptococcaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --