Regulog RutR2 - Alteromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Pyrimidine utilization
Effector:	Uracil
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 2 sites [see more]

Member of regulog collections

By trascription factor - RutR
By taxonomy - Alteromonadales
By TF family - TetR
By effector - Uracil
By pathway - Pyrimidine utilization

Statistics of regulated genes
Genome	Genes	Operons
Idiomarina loihiensis L2TR
Idiomarina baltica OS145
Pseudoalteromonas tunicata D2
Pseudoalteromonas haloplanktis TAC125
Alteromonadales bacterium TW-7
Colwellia psychrerythraea 34H
Glaciecola sp. HTCC2999
Alteromonas macleodii 'Deep ecotype'	8	2
Pseudoalteromonas atlantica T6c

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes										Function

CRON 1.
rutR2	Idiomarina loihiensis L2TR	Idiomarina baltica OS145	Pseudoalteromonas tunicata D2	Pseudoalteromonas haloplanktis TAC125	Alteromonadales bacterium TW-7	Colwellia psychrerythraea 34H	Glaciecola sp. HTCC2999	* Alteromonas macleodii 'Deep ecotype' Site: position = -139 score = 5.38566 sequence = AATGGACCTTTTGGTTCAAT Gene: MADE_00759: Transcriptional regulator RutR of pyrimidine catabolism, TetR family	Pseudoalteromonas atlantica T6c	Transcriptional regulator RutR of pyrimidine catabolism, TetR family

CRON 2.
rutA	Idiomarina loihiensis L2TR	Idiomarina baltica OS145	Pseudoalteromonas tunicata D2	Pseudoalteromonas haloplanktis TAC125	Alteromonadales bacterium TW-7	Colwellia psychrerythraea 34H	Glaciecola sp. HTCC2999	* Alteromonas macleodii 'Deep ecotype' Site: position = -182 score = 5.38566 sequence = ATTGAACCAAAAGGTCCATT Gene: MADE_00760: Pyrimidine oxygenase	Pseudoalteromonas atlantica T6c	Pyrimidine oxygenase
rutB	Idiomarina loihiensis L2TR	Idiomarina baltica OS145	Pseudoalteromonas tunicata D2	Pseudoalteromonas haloplanktis TAC125	Alteromonadales bacterium TW-7	Colwellia psychrerythraea 34H	Glaciecola sp. HTCC2999	Alteromonas macleodii 'Deep ecotype' Gene: MADE_00761: Peroxyureidoacrylate / ureidoacrylate amido hydrolase	Pseudoalteromonas atlantica T6c	Peroxyureidoacrylate / ureidoacrylate amido hydrolase
rutC	Idiomarina loihiensis L2TR	Idiomarina baltica OS145	Pseudoalteromonas tunicata D2	Pseudoalteromonas haloplanktis TAC125	Alteromonadales bacterium TW-7	Colwellia psychrerythraea 34H	Glaciecola sp. HTCC2999	Alteromonas macleodii 'Deep ecotype' Gene: MADE_00762: Aminoacrylate peracid reductase	Pseudoalteromonas atlantica T6c	Aminoacrylate peracid reductase
rutD	Idiomarina loihiensis L2TR	Idiomarina baltica OS145	Pseudoalteromonas tunicata D2	Pseudoalteromonas haloplanktis TAC125	Alteromonadales bacterium TW-7	Colwellia psychrerythraea 34H	Glaciecola sp. HTCC2999	Alteromonas macleodii 'Deep ecotype' Gene: MADE_00763: Aminoacrylate hydrolase	Pseudoalteromonas atlantica T6c	Aminoacrylate hydrolase
rutE	Idiomarina loihiensis L2TR	Idiomarina baltica OS145	Pseudoalteromonas tunicata D2	Pseudoalteromonas haloplanktis TAC125	Alteromonadales bacterium TW-7	Colwellia psychrerythraea 34H	Glaciecola sp. HTCC2999	Alteromonas macleodii 'Deep ecotype' Gene: MADE_00764: 3-hydroxy propionic acid dehydrogenase	Pseudoalteromonas atlantica T6c	3-hydroxy propionic acid dehydrogenase
rutF	Idiomarina loihiensis L2TR	Idiomarina baltica OS145	Pseudoalteromonas tunicata D2	Pseudoalteromonas haloplanktis TAC125	Alteromonadales bacterium TW-7	Colwellia psychrerythraea 34H	Glaciecola sp. HTCC2999	Alteromonas macleodii 'Deep ecotype' Gene: MADE_00765: Flavin reductase	Pseudoalteromonas atlantica T6c	Flavin reductase
mmsA1	Idiomarina loihiensis L2TR	Idiomarina baltica OS145	Pseudoalteromonas tunicata D2	Pseudoalteromonas haloplanktis TAC125	Alteromonadales bacterium TW-7	Colwellia psychrerythraea 34H	Glaciecola sp. HTCC2999	Alteromonas macleodii 'Deep ecotype' Gene: MADE_00766: methylmalonate-semialdehyde dehydrogenase	Pseudoalteromonas atlantica T6c	Methylmalonate-semialdehyde dehydrogenase (EC 1.2.1.27)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog RutR2 - Alteromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --