Regulog FabR2 - Pseudomonadaceae
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Fatty acid biosynthesis |
| Effector: | Unsaturated acyl-ACP; Unsaturated acyl-CoA |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Pseudomonadaceae
- By trascription factor - FabR
- By TF family - TetR
- By effector - Unsaturated acyl-ACP
- By effector - Unsaturated acyl-CoA
- By pathway - Fatty acid biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Pseudomonas aeruginosa PAO1 | 3 | 2 |
| Pseudomonas entomophila L48 | ||
| Pseudomonas fluorescens Pf-5 | ||
| Pseudomonas mendocina ymp | 3 | 2 |
| Pseudomonas putida KT2440 | ||
| Pseudomonas stutzeri A1501 | ||
| Pseudomonas syringae pv. tomato str. DC3000 | ||
| Azotobacter vinelandii AvOP |
| Genes | Function | ||||||||
|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | |||||||||
| fabR2 |
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Pseudomonas aeruginosa PAO1 Site: position = -98 score = 5.46788 sequence = TGTAGACATCTGTATACT Gene: PA1539: Unsaturated fatty acid biosythesis repressor FabR2, TetR family |
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Pseudomonas mendocina ymp Site: position = -66 score = 5.39152 sequence = GGTAGACATGTGTATACT Site: position = -86 score = 5.34893 sequence = TGTCTACATCTGTATACC Gene: Pmen_2619: Unsaturated fatty acid biosythesis repressor FabR2, TetR family |
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Unsaturated fatty acid biosythesis repressor FabR2, TetR family |
| CRON 2. | |||||||||
| COG2072 |
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Pseudomonas aeruginosa PAO1 Site: position = -33 score = 5.46788 sequence = AGTATACAGATGTCTACA Gene: PA1538: probable flavin-containing monooxygenase, COG2072 |
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Gene: PFL_2933: probable flavin-containing monooxygenase, COG2072 |
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Pseudomonas mendocina ymp Site: position = -68 score = 5.39152 sequence = AGTATACACATGTCTACC Site: position = -48 score = 5.34893 sequence = GGTATACAGATGTAGACA Gene: Pmen_2620: probable flavin-containing monooxygenase, COG2072 |
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probable flavin-containing monooxygenase, COG2072 |
| COG0300 |
Gene: PA1537: probable short-chain dehydrogenase, COG0300 |
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Gene: Pmen_2621: probable short-chain dehydrogenase, COG0300 |
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probable short-chain dehydrogenase, COG0300 |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |