Regulog FabR2 - Oceanospirillales/Alteromonadales

Properties
Regulator type:	Transcription factor
Regulator family:	TetR
Regulation mode:	repressor
Biological process:	Fatty acid biosynthesis
Effector:	Unsaturated acyl-CoA; Unsaturated acyl-ACP
Phylum:	Proteobacteria/gamma
Visualization:
	Allows to visualize regulog content in the context of metabolic pathways

Built upon 6 sites [see more]

Member of regulog collections

By taxonomy - Oceanospirillales/Alteromonadales
By trascription factor - FabR
By TF family - TetR
By effector - Unsaturated acyl-CoA
By effector - Unsaturated acyl-ACP
By pathway - Fatty acid biosynthesis

Statistics of regulated genes
Genome	Genes	Operons
Hahella chejuensis KCTC 2396	4	2
Marinobacter aqueolei	1	1
Marinobacter sp. ELB17
Oceanobacter sp. RED65
Oceanospirillum sp. MED92
Marinomonas sp. MWYL1
Saccharophagus degradans 2-40
Teredinibacter turnerae T7901
Cellvibrio japonicus Ueda107
Chromohalobacter salexigens DSM 3043
Reinekea sp. MED297	2	2
Alcanivorax borkumensis SK2

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes													Function

CRON 1.
lcfH	Hahella chejuensis KCTC 2396	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	* Reinekea sp. MED297 Site: position = -37 score = 6.16239 sequence = AATATACATCTGTATATT Gene: MED297_11585: putative long-chain-fatty-acid--CoA ligase	Alcanivorax borkumensis SK2	putative long-chain-fatty-acid--CoA ligase

CRON 2.
hyIII	Hahella chejuensis KCTC 2396 Gene: HCH_04808: COG1272: Predicted membrane protein hemolysin III homolog	Marinobacter aqueolei Gene: Maqu_3135: COG1272: Predicted membrane protein hemolysin III homolog	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1 Gene: Mmwyl1_3326: COG1272: Predicted membrane protein hemolysin III homolog	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043 Gene: Csal_0114: COG1272: Predicted membrane protein hemolysin III homolog	* Reinekea sp. MED297 Site: position = -43 score = 6.16239 sequence = AATATACACTTGTATATT Gene: MED297_00660: COG1272: Predicted membrane protein hemolysin III homolog	Alcanivorax borkumensis SK2 Gene: ABO_2634: COG1272: Predicted membrane protein hemolysin III homolog	COG1272: Predicted membrane protein hemolysin III homolog

CRON 3.
COG2072	Hahella chejuensis KCTC 2396 Gene: HCH_04349: probable flavin-containing monooxygenase, COG2072	* Marinobacter aqueolei Site: position = -80 score = 5.27258 sequence = GGTATACATGTGTCTACC Site: position = -104 score = 5.27258 sequence = GGTATACAGGTGTCTACT Gene: Maqu_3819: probable flavin-containing monooxygenase, COG2072	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	probable flavin-containing monooxygenase, COG2072

CRON 4.
desC	* Hahella chejuensis KCTC 2396 Site: position = -61 score = 4.80714 sequence = TGTGAACAACTGTATATT Gene: HCH_03838: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	Flavodoxin reductases (ferredoxin-NADPH reductases) family 1
desB	Hahella chejuensis KCTC 2396 Gene: HCH_03837: Acyl-CoA delta-9-desaturase, DesB	Marinobacter aqueolei	Marinobacter sp. ELB17	Oceanobacter sp. RED65	Oceanospirillum sp. MED92	Marinomonas sp. MWYL1	Saccharophagus degradans 2-40	Teredinibacter turnerae T7901	Cellvibrio japonicus Ueda107	Chromohalobacter salexigens DSM 3043	Reinekea sp. MED297	Alcanivorax borkumensis SK2	Acyl-CoA delta-9-desaturase, DesB

CRON 5.
fabA	* Hahella chejuensis KCTC 2396 Site: position = -206 score = 5.1405 sequence = TCTATACATCTGTATTTT Gene: HCH_06403: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	Marinobacter aqueolei Gene: Maqu_3147: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	Marinobacter sp. ELB17 Gene: MELB17_04237: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	Oceanobacter sp. RED65 Gene: RED65_09934: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	Oceanospirillum sp. MED92 Gene: MED92_18318: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	Marinomonas sp. MWYL1 Gene: Mmwyl1_4241: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	Saccharophagus degradans 2-40 Gene: Sde_0999: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	Teredinibacter turnerae T7901 Gene: TERTU_0948: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	Cellvibrio japonicus Ueda107 Gene: CJA_0750: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	Chromohalobacter salexigens DSM 3043 Gene: Csal_0457: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	Reinekea sp. MED297 Gene: MED297_01470: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	Alcanivorax borkumensis SK2 Gene: ABO_0835: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)	3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60)
fabB	Hahella chejuensis KCTC 2396 Gene: HCH_06402: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)	Marinobacter aqueolei Gene: Maqu_3148: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)	Marinobacter sp. ELB17 Gene: MELB17_04232: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)	Oceanobacter sp. RED65 Gene: RED65_09929: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)	Oceanospirillum sp. MED92 Gene: MED92_18323: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)	Marinomonas sp. MWYL1 Gene: Mmwyl1_4242: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)	Saccharophagus degradans 2-40 Gene: Sde_0998: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)	Teredinibacter turnerae T7901 Gene: TERTU_0947: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)	Cellvibrio japonicus Ueda107 Gene: CJA_0749: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)	Chromohalobacter salexigens DSM 3043 Gene: Csal_0456: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)	Reinekea sp. MED297 Gene: MED297_01465: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)	Alcanivorax borkumensis SK2 Gene: ABO_0834: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)	3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog FabR2 - Oceanospirillales/Alteromonadales

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --