Regulog FabR2 - Oceanospirillales/Alteromonadales
| Regulator type: | Transcription factor |
| Regulator family: | TetR |
| Regulation mode: | repressor |
| Biological process: | Fatty acid biosynthesis |
| Effector: | Unsaturated acyl-CoA; Unsaturated acyl-ACP |
| Phylum: | Proteobacteria/gamma |
| Visualization: | |
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Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Oceanospirillales/Alteromonadales
- By trascription factor - FabR
- By TF family - TetR
- By effector - Unsaturated acyl-CoA
- By effector - Unsaturated acyl-ACP
- By pathway - Fatty acid biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Hahella chejuensis KCTC 2396 | 4 | 2 |
| Marinobacter aqueolei | 1 | 1 |
| Marinobacter sp. ELB17 | ||
| Oceanobacter sp. RED65 | ||
| Oceanospirillum sp. MED92 | ||
| Marinomonas sp. MWYL1 | ||
| Saccharophagus degradans 2-40 | ||
| Teredinibacter turnerae T7901 | ||
| Cellvibrio japonicus Ueda107 | ||
| Chromohalobacter salexigens DSM 3043 | ||
| Reinekea sp. MED297 | 2 | 2 |
| Alcanivorax borkumensis SK2 |
| Genes | Function | ||||||||||||
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| CRON 1. | |||||||||||||
| lcfH |
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Reinekea sp. MED297 Site: position = -37 score = 6.16239 sequence = AATATACATCTGTATATT Gene: MED297_11585: putative long-chain-fatty-acid--CoA ligase |
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putative long-chain-fatty-acid--CoA ligase |
| CRON 2. | |||||||||||||
| hyIII |
Gene: HCH_04808: COG1272: Predicted membrane protein hemolysin III homolog |
Gene: Maqu_3135: COG1272: Predicted membrane protein hemolysin III homolog |
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Gene: Mmwyl1_3326: COG1272: Predicted membrane protein hemolysin III homolog |
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Gene: Csal_0114: COG1272: Predicted membrane protein hemolysin III homolog |
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Reinekea sp. MED297 Site: position = -43 score = 6.16239 sequence = AATATACACTTGTATATT Gene: MED297_00660: COG1272: Predicted membrane protein hemolysin III homolog |
Gene: ABO_2634: COG1272: Predicted membrane protein hemolysin III homolog |
COG1272: Predicted membrane protein hemolysin III homolog |
| CRON 3. | |||||||||||||
| COG2072 |
Gene: HCH_04349: probable flavin-containing monooxygenase, COG2072 |
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Marinobacter aqueolei Site: position = -80 score = 5.27258 sequence = GGTATACATGTGTCTACC Site: position = -104 score = 5.27258 sequence = GGTATACAGGTGTCTACT Gene: Maqu_3819: probable flavin-containing monooxygenase, COG2072 |
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probable flavin-containing monooxygenase, COG2072 |
| CRON 4. | |||||||||||||
| desC |
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Hahella chejuensis KCTC 2396 Site: position = -61 score = 4.80714 sequence = TGTGAACAACTGTATATT Gene: HCH_03838: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
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Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
| desB |
Gene: HCH_03837: Acyl-CoA delta-9-desaturase, DesB |
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Acyl-CoA delta-9-desaturase, DesB |
| CRON 5. | |||||||||||||
| fabA |
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Hahella chejuensis KCTC 2396 Site: position = -206 score = 5.1405 sequence = TCTATACATCTGTATTTT Gene: HCH_06403: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
Gene: Maqu_3147: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
Gene: MELB17_04237: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
Gene: RED65_09934: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
Gene: MED92_18318: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
Gene: Mmwyl1_4241: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
Gene: Sde_0999: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
Gene: TERTU_0948: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
Gene: CJA_0750: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
Gene: Csal_0457: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
Gene: MED297_01470: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
Gene: ABO_0835: 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase (EC 4.2.1.60) |
| fabB |
Gene: HCH_06402: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) |
Gene: Maqu_3148: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) |
Gene: MELB17_04232: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) |
Gene: RED65_09929: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) |
Gene: MED92_18323: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) |
Gene: Mmwyl1_4242: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) |
Gene: Sde_0998: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) |
Gene: TERTU_0947: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) |
Gene: CJA_0749: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) |
Gene: Csal_0456: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) |
Gene: MED297_01465: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) |
Gene: ABO_0834: 3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) |
3-oxoacyl-[acyl-carrier-protein] synthase, KASI (EC 2.3.1.41) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |