Regulog T-box(Val) - Streptococcaceae
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Val-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Streptococcaceae
- By RNA motif - T-box
- By effector - Val-tRNA
- By pathway - Amino acid metabolism
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| SP_0565 |
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Streptococcus pneumoniae TIGR4 Site: position = -371 score = 57.9 sequence = TAGAGCCATTAGAGG... Gene: SP_0565: Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family, putative |
*
Streptococcus gallolyticus UCN34 Site: position = -211 score = 41.55 sequence = AAAACATTCAGAGGT... Gene: GALLO_0525: Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family, putative |
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Gene: SSA_0505: Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family, putative |
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Streptococcus thermophilus CNRZ1066 Site: position = -321 score = 46.08 sequence = ATAAGACTATTCAGA... Gene: str0474: Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family, putative |
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*
Streptococcus mitis B6 Site: position = -243 score = 55.81 sequence = ATAGAGCCATTAGAG... Gene: smi_0386: Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family, putative |
Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family, putative |
| rimL |
Gene: SP_0566: Acetyltransferase (EC 2.3.1.-) |
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Streptococcus sanguinis SK36 Site: position = -243 score = 51.98 sequence = GATAGAATAAGTTCA... Gene: SSA_1821: Acetyltransferase (EC 2.3.1.-) |
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Gene: str0476: Acetyltransferase (EC 2.3.1.-) |
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Gene: smi_0387: Acetyltransferase (EC 2.3.1.-) |
Acetyltransferase (EC 2.3.1.-) |
| SP_0567 |
Gene: SP_0567: Shikimate kinase |
Gene: GALLO_0527: Shikimate kinase |
Gene: SDEG_1563: Shikimate kinase |
Gene: SSU05_0458: Shikimate kinase |
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Gene: SAG0444: Shikimate kinase |
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Gene: SPy1569: Shikimate kinase |
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Gene: Sez_1483: Shikimate kinase |
Gene: smi_0388: Shikimate kinase |
Shikimate kinase |
| valS |
Gene: SP_0568: Valyl-tRNA synthetase (EC 6.1.1.9) |
Gene: GALLO_0528: Valyl-tRNA synthetase (EC 6.1.1.9) |
Gene: SDEG_1562: Valyl-tRNA synthetase (EC 6.1.1.9) |
Gene: SSU05_0459: Valyl-tRNA synthetase (EC 6.1.1.9) |
*
Lactococcus lactis subsp. lactis Il1403 Site: position = -209 score = 89.2 sequence = AAACAAGTTGACGAG... Gene: L0351: Valyl-tRNA synthetase (EC 6.1.1.9) |
Gene: LACR_2479: Valyl-tRNA synthetase (EC 6.1.1.9) |
Gene: SUB1342: Valyl-tRNA synthetase (EC 6.1.1.9) |
Gene: SAG0445: Valyl-tRNA synthetase (EC 6.1.1.9) |
Gene: SSA_1819: Valyl-tRNA synthetase (EC 6.1.1.9) |
Gene: SPy1568: Valyl-tRNA synthetase (EC 6.1.1.9) |
Gene: SMU.1770: Valyl-tRNA synthetase (EC 6.1.1.9) |
Gene: str0477: Valyl-tRNA synthetase (EC 6.1.1.9) |
Gene: SGO_0639: Valyl-tRNA synthetase (EC 6.1.1.9) |
Gene: Sez_1482: Valyl-tRNA synthetase (EC 6.1.1.9) |
Gene: smi_0389: Valyl-tRNA synthetase (EC 6.1.1.9) |
Valyl-tRNA synthetase (EC 6.1.1.9) |
| SMU.1773c |
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*
Streptococcus mutans UA159 Site: position = -274 score = 33.37 sequence = CTGATAAAATAAGGT... Gene: SMU.1773c: hypothetical protein |
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hypothetical protein |
| SMU.1772c |
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Gene: SMU.1772c: hypothetical protein |
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hypothetical protein |
| SMU.1771c |
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Gene: SMU.1771c: hypothetical protein |
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hypothetical protein |
| SGO_0637 |
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Gene: GALLO_0526: Ribosomal-protein-serine acetyltransferase (EC 2.3.1.-) |
Gene: SDEG_1564: Ribosomal-protein-serine acetyltransferase (EC 2.3.1.-) |
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Gene: LACR_1513: Ribosomal-protein-serine acetyltransferase (EC 2.3.1.-) |
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Gene: SAG0443: Ribosomal-protein-serine acetyltransferase (EC 2.3.1.-) |
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Streptococcus pyogenes M1 GAS Site: position = -387 score = 39.37 sequence = AATATTAGCAATCAG... Gene: SPy1570: Ribosomal-protein-serine acetyltransferase (EC 2.3.1.-) |
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Streptococcus gordonii str. Challis substr. CH1 Site: position = -314 score = 51.67 sequence = TATGTTCATCAGAGG... Gene: SGO_0637: Ribosomal-protein-serine acetyltransferase (EC 2.3.1.-) |
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Ribosomal-protein-serine acetyltransferase (EC 2.3.1.-) |
| SSU05_0457 |
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*
Streptococcus dysgalactiae subsp. equisimilis GGS_124 Site: position = -317 score = 34.38 sequence = AATATTAGCAATCAG... Gene: SDEG_1565: Lactoylglutathione lyase and related lyases |
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Streptococcus suis 05ZYH33 Site: position = -222 score = 49.59 sequence = ACAATAAAGCCATTC... Gene: SSU05_0457: Lactoylglutathione lyase and related lyases |
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Lactoylglutathione lyase and related lyases |
| SUB1345 |
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Gene: SDEG_1394: acetyltransferase |
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Streptococcus uberis 0140J Site: position = -221 score = 43.79 sequence = TTAGAATAACAGTAA... Gene: SUB1345: acetyltransferase |
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acetyltransferase |
| SUB1344 |
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Gene: SSU05_0315: hypothetical protein |
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Gene: SUB1344: hypothetical protein |
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hypothetical protein |
| SUB1343 |
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Gene: SUB1343: hypothetical protein |
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hypothetical protein |
| Sez_1484 |
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Streptococcus agalactiae 2603V/R Site: position = -226 score = 41.18 sequence = AATTAACTTAGAGGT... Gene: SAG0442: acetyltransferase, GNAT family |
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Streptococcus equi subsp. zooepidemicus MGCS10565 Site: position = -218 score = 41.94 sequence = AGCAAATTCAGAGGT... Gene: Sez_1484: acetyltransferase, GNAT family |
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acetyltransferase, GNAT family |
| SGO_0638 |
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Gene: SMU.1262c: hypothetical protein |
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Gene: SGO_0638: hypothetical protein |
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hypothetical protein |
| SSA_1820 |
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Gene: SSA_1820: hypothetical protein |
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hypothetical protein |
| LACR_2480 |
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Lactococcus lactis subsp. cremoris SK11 Site: position = -320 score = 83.95 sequence = AAACAAGTTGACGAG... Gene: LACR_2480: hypothetical protein |
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hypothetical protein |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |