Regulog T-box(Val) - Lactobacillaceae
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Val-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By RNA motif - T-box
- By effector - Val-tRNA
- By pathway - Amino acid metabolism
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| brnQ |
|
Gene: LAR_1569: Branched-chain amino acid transport system carrier protein |
|
*
Lactobacillus fermentum IFO 3956 Site: position = -329 score = 82.34 sequence = GAAACACGGTGAACA... Gene: LAF_0278: Branched-chain amino acid transport system carrier protein |
|
|
*2
Lactobacillus acidophilus NCFM Site: position = -300 score = 102.06 sequence = TACACACTATGAATA... Gene: LBA1222: Branched-chain amino acid transport system carrier protein Gene: LBA1224: Branched-chain amino acid transport system carrier protein |
|
*
Lactobacillus plantarum WCFS1 Site: position = -444 score = 99.22 sequence = TAAACGTGATGATCA... Gene: lp_0399: Branched-chain amino acid transport system carrier protein |
*
Lactobacillus casei ATCC 334 Site: position = -356 score = 86.33 sequence = ACTAAAAACGATGAG... Gene: LSEI_0248: Branched-chain amino acid transport system carrier protein |
*
Lactobacillus brevis ATCC 367 Site: position = -290 score = 78.04 sequence = TTATAAAACGTTGAA... Gene: LVIS_2119: Branched-chain amino acid transport system carrier protein |
|
|
|
*
Lactobacillus rhamnosus GG Site: position = -339 score = 85.89 sequence = TTCAAAAACGATGAG... Gene: LGG_00292: Branched-chain amino acid transport system carrier protein |
Branched-chain amino acid transport system carrier protein |
| CRON 2. | ||||||||||||||||
| valS |
*
Oenococcus oeni PSU-1 Site: position = -327 score = 68.29 sequence = ATACTAATAGTCAAC... Gene: OEOE_1392: Valyl-tRNA synthetase (EC 6.1.1.9) |
*
Lactobacillus reuteri JCM 1112 Site: position = -283 score = 118.28 sequence = AATAAGCATTGACCG... Gene: LAR_0490: Valyl-tRNA synthetase (EC 6.1.1.9) |
*
Lactobacillus helveticus DPC 4571 Site: position = -242 score = 73.55 sequence = CCAAAGCAAGAATCA... Gene: lhv_0841: Valyl-tRNA synthetase (EC 6.1.1.9) |
*
Lactobacillus fermentum IFO 3956 Site: position = -264 score = 119.36 sequence = TCAATGCGATGAACG... Gene: LAF_0497: Valyl-tRNA synthetase (EC 6.1.1.9) |
*
Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -263 score = 106.01 sequence = CATATAAGCAATGAA... Gene: LSL_1072: Valyl-tRNA synthetase (EC 6.1.1.9) |
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -231 score = 63.69 sequence = ACAAAGCCAAGATCA... Gene: LBUL_0659: Valyl-tRNA synthetase (EC 6.1.1.9) |
*
Lactobacillus acidophilus NCFM Site: position = -246 score = 86.37 sequence = ACAAAGCCATAATCA... Gene: LBA0794: Valyl-tRNA synthetase (EC 6.1.1.9) |
*
Lactobacillus johnsonii NCC 533 Site: position = -250 score = 88.96 sequence = ACAAAGCAAGAATCA... Gene: LJ0958: Valyl-tRNA synthetase (EC 6.1.1.9) |
*
Lactobacillus plantarum WCFS1 Site: position = -287 score = 109.76 sequence = ACAACCAGCAATGAG... Gene: lp_2322: Valyl-tRNA synthetase (EC 6.1.1.9) |
*
Lactobacillus casei ATCC 334 Site: position = -291 score = 114.89 sequence = CTAATGCAATGATCA... Gene: LSEI_1251: Valyl-tRNA synthetase (EC 6.1.1.9) |
*
Lactobacillus brevis ATCC 367 Site: position = -281 score = 121.26 sequence = AAAACTAGCGTTGAA... Gene: LVIS_1253: Valyl-tRNA synthetase (EC 6.1.1.9) |
*
Lactobacillus sakei subsp. sakei 23K Site: position = -272 score = 101.54 sequence = ACAACGCGTTGAACA... Gene: LSA0849: Valyl-tRNA synthetase (EC 6.1.1.9) |
*
Pediococcus pentosaceus ATCC 25745 Site: position = -258 score = 90.45 sequence = TCTGAAGGTTATGAC... Gene: PEPE_1291: Valyl-tRNA synthetase (EC 6.1.1.9) |
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -234 score = 76.91 sequence = AATAATCTTAGAGGA... Gene: LEUM_0322: Valyl-tRNA synthetase (EC 6.1.1.9) |
*
Lactobacillus rhamnosus GG Site: position = -332 score = 113.23 sequence = CTAATGCAATGATCA... Gene: LGG_01261: Valyl-tRNA synthetase (EC 6.1.1.9) |
Valyl-tRNA synthetase (EC 6.1.1.9) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |