Regulog T-box(Tyr) - Lactobacillaceae

Properties
Regulator type:	RNA regulatory element
Name:	T-box
RFAM:	RF00230
Regulation mode:
Biological process:	Amino acid metabolism
Effector:	Tyr-tRNA
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Lactobacillaceae
By RNA motif - T-box
By effector - Tyr-tRNA
By pathway - Amino acid metabolism

Statistics of regulated genes
Genome	Genes	Operons
Oenococcus oeni PSU-1	1	1
Lactobacillus reuteri JCM 1112	2	2
Lactobacillus helveticus DPC 4571	2	2
Lactobacillus fermentum IFO 3956	1	1
Lactobacillus salivarius subsp. salivarius UCC118	3	3
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	2	2
Lactobacillus acidophilus NCFM	2	2
Lactobacillus johnsonii NCC 533	2	2
Lactobacillus plantarum WCFS1	3	3
Lactobacillus casei ATCC 334	1	1
Lactobacillus brevis ATCC 367	5	3
Lactobacillus sakei subsp. sakei 23K	2	2
Pediococcus pentosaceus ATCC 25745	2	2
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	2	2
Lactobacillus rhamnosus GG	1	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
LVIS_2216	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571	Lactobacillus fermentum IFO 3956	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1	Lactobacillus casei ATCC 334	* Lactobacillus brevis ATCC 367 Site: position = -459 score = 51.65 sequence = TAAGAAATCTTTCAA... Gene: LVIS_2216: hypothetical protein	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Lactobacillus rhamnosus GG	hypothetical protein
PEPE_0593	Oenococcus oeni PSU-1	Lactobacillus reuteri JCM 1112	Lactobacillus helveticus DPC 4571	Lactobacillus fermentum IFO 3956	Lactobacillus salivarius subsp. salivarius UCC118	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	Lactobacillus acidophilus NCFM	Lactobacillus johnsonii NCC 533	Lactobacillus plantarum WCFS1	Lactobacillus casei ATCC 334	Lactobacillus brevis ATCC 367 Gene: LVIS_2215: hypothetical protein	Lactobacillus sakei subsp. sakei 23K	Pediococcus pentosaceus ATCC 25745	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	Lactobacillus rhamnosus GG	hypothetical protein
tyrS	* Oenococcus oeni PSU-1 Site: position = -209 score = 71.99 sequence = TCTCGGCTGATAGTA... Gene: OEOE_1815: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1	* Lactobacillus reuteri JCM 1112 Site: position = -238 score = 69.3 sequence = CAAAGATGAAGAAGT... Gene: LAR_0142: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1	* Lactobacillus helveticus DPC 4571 Site: position = -219 score = 49.91 sequence = TAACTAACGAATGAG... Gene: lhv_0208: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1	* Lactobacillus fermentum IFO 3956 Site: position = -249 score = 61.52 sequence = TAGTTACATTGTGAT... Gene: LAF_0068: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1	* Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -242 score = 107.27 sequence = TATTAAAGCGATGAA... Gene: LSL_1366: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1	* Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -222 score = 49.09 sequence = AAAACGCGACAATGA... Gene: LBUL_0219: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1	* Lactobacillus acidophilus NCFM Site: position = -222 score = 58.19 sequence = TCATTATTAACACAA... Gene: LBA0192: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1	* Lactobacillus johnsonii NCC 533 Site: position = -206 score = 50.06 sequence = CATAGGTAATAATAG... Gene: LJ0175: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1	* Lactobacillus plantarum WCFS1 Site: position = -249 score = 106.12 sequence = TTAAAAAGTAGTGAT... Gene: lp_2807: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1	* Lactobacillus casei ATCC 334 Site: position = -432 score = 76.72 sequence = CATAAAGTCACCAGA... Gene: LSEI_2031: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1	2 Lactobacillus brevis ATCC 367* Gene: LVIS_2214: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1 Site: position = -251 score = 99.57 sequence = CATAAGCAAAGAAGC... Gene: LVIS_0424: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1	* Lactobacillus sakei subsp. sakei 23K Site: position = -256 score = 66.94 sequence = AAATATCAATGACCG... Gene: LSA0769: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1	* Pediococcus pentosaceus ATCC 25745 Site: position = -263 score = 100.75 sequence = ACGAAGCTTTGAAGT... Gene: PEPE_0235: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1	* Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -232 score = 87.59 sequence = ATTCATTACACTGAT... Gene: LEUM_2044: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1	* Lactobacillus rhamnosus GG Site: position = -294 score = 74.25 sequence = TATAAAATTTACCAG... Gene: LGG_02017: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1	Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1

CRON 2.
tyrT	Oenococcus oeni PSU-1	2 Lactobacillus reuteri JCM 1112* Gene: LAR_0159: Predicted tyrosine transporter, NhaC family Site: position = -250 score = 61.07 sequence = ACAATTATCGTTTCA... Gene: LAR_1714: Predicted tyrosine transporter, NhaC family	* Lactobacillus helveticus DPC 4571 Site: position = -243 score = 68.95 sequence = TCAACAATCAACGAC... Gene: lhv_0562: Predicted tyrosine transporter, NhaC family	Lactobacillus fermentum IFO 3956 Gene: LAF_1456: Predicted tyrosine transporter, NhaC family	2 Lactobacillus salivarius subsp. salivarius UCC118* Site: position = -305 score = 78.05 sequence = TAATTCTAATGGAAC... Gene: LSL_0931: Predicted tyrosine transporter, NhaC family Site: position = -317 score = 58.24 sequence = TCTTATTAATGATTT... Gene: LSL_0855: Predicted tyrosine transporter, NhaC family	* Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -305 score = 57.7 sequence = AAAATTCGAGTGATC... Gene: LBUL_1680: Predicted tyrosine transporter, NhaC family	* Lactobacillus acidophilus NCFM Site: position = -237 score = 68.48 sequence = CAACAATTAACGAAA... Gene: LBA0538: Predicted tyrosine transporter, NhaC family	* Lactobacillus johnsonii NCC 533 Site: position = -223 score = 59.59 sequence = TAATTATCGTCACAG... Gene: LJ1701: Predicted tyrosine transporter, NhaC family	2 Lactobacillus plantarum WCFS1* Site: position = -362 score = 76.07 sequence = TAACTGTACGATAAC... Gene: lp_3338: Predicted tyrosine transporter, NhaC family Site: position = -340 score = 65.35 sequence = ATAACGAACGATAAT... Gene: lp_0192: Predicted tyrosine transporter, NhaC family	Lactobacillus casei ATCC 334	2 Lactobacillus brevis ATCC 367* Site: position = -278 score = 59.6 sequence = TAATTTCCATTACCA... Gene: LVIS_0199: Predicted tyrosine transporter, NhaC family Gene: LVIS_2211: Predicted tyrosine transporter, NhaC family	* Lactobacillus sakei subsp. sakei 23K Site: position = -386 score = 61.36 sequence = TCATCTCATTCAAAC... Gene: LSA1827: Predicted tyrosine transporter, NhaC family	* Pediococcus pentosaceus ATCC 25745 Site: position = -262 score = 64.2 sequence = CATTTTAACTTTCAC... Gene: PEPE_1838: Predicted tyrosine transporter, NhaC family	* Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -262 score = 64.5 sequence = CATAAATACTAAGTA... Gene: LEUM_2006: Predicted tyrosine transporter, NhaC family	Lactobacillus rhamnosus GG	Predicted tyrosine transporter, NhaC family

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

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	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog T-box(Tyr) - Lactobacillaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --