Regulog T-box(Tyr) - Lactobacillaceae
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Tyr-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By RNA motif - T-box
- By effector - Tyr-tRNA
- By pathway - Amino acid metabolism
| Genes | Function | |||||||||||||||
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| CRON 1. | ||||||||||||||||
| LVIS_2216 |
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Lactobacillus brevis ATCC 367 Site: position = -459 score = 51.65 sequence = TAAGAAATCTTTCAA... Gene: LVIS_2216: hypothetical protein |
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hypothetical protein |
| PEPE_0593 |
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Gene: LVIS_2215: hypothetical protein |
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hypothetical protein |
| tyrS |
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Oenococcus oeni PSU-1 Site: position = -209 score = 71.99 sequence = TCTCGGCTGATAGTA... Gene: OEOE_1815: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1 |
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Lactobacillus reuteri JCM 1112 Site: position = -238 score = 69.3 sequence = CAAAGATGAAGAAGT... Gene: LAR_0142: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1 |
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Lactobacillus helveticus DPC 4571 Site: position = -219 score = 49.91 sequence = TAACTAACGAATGAG... Gene: lhv_0208: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1 |
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Lactobacillus fermentum IFO 3956 Site: position = -249 score = 61.52 sequence = TAGTTACATTGTGAT... Gene: LAF_0068: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1 |
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Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -242 score = 107.27 sequence = TATTAAAGCGATGAA... Gene: LSL_1366: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1 |
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Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -222 score = 49.09 sequence = AAAACGCGACAATGA... Gene: LBUL_0219: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1 |
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Lactobacillus acidophilus NCFM Site: position = -222 score = 58.19 sequence = TCATTATTAACACAA... Gene: LBA0192: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1 |
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Lactobacillus johnsonii NCC 533 Site: position = -206 score = 50.06 sequence = CATAGGTAATAATAG... Gene: LJ0175: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1 |
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Lactobacillus plantarum WCFS1 Site: position = -249 score = 106.12 sequence = TTAAAAAGTAGTGAT... Gene: lp_2807: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1 |
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Lactobacillus casei ATCC 334 Site: position = -432 score = 76.72 sequence = CATAAAGTCACCAGA... Gene: LSEI_2031: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1 |
*2
Lactobacillus brevis ATCC 367 Gene: LVIS_2214: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1 Site: position = -251 score = 99.57 sequence = CATAAGCAAAGAAGC... Gene: LVIS_0424: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1 |
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Lactobacillus sakei subsp. sakei 23K Site: position = -256 score = 66.94 sequence = AAATATCAATGACCG... Gene: LSA0769: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1 |
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Pediococcus pentosaceus ATCC 25745 Site: position = -263 score = 100.75 sequence = ACGAAGCTTTGAAGT... Gene: PEPE_0235: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1 |
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Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -232 score = 87.59 sequence = ATTCATTACACTGAT... Gene: LEUM_2044: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1 |
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Lactobacillus rhamnosus GG Site: position = -294 score = 74.25 sequence = TATAAAATTTACCAG... Gene: LGG_02017: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1 |
Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1 |
| CRON 2. | ||||||||||||||||
| tyrT |
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*2
Lactobacillus reuteri JCM 1112 Gene: LAR_0159: Predicted tyrosine transporter, NhaC family Site: position = -250 score = 61.07 sequence = ACAATTATCGTTTCA... Gene: LAR_1714: Predicted tyrosine transporter, NhaC family |
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Lactobacillus helveticus DPC 4571 Site: position = -243 score = 68.95 sequence = TCAACAATCAACGAC... Gene: lhv_0562: Predicted tyrosine transporter, NhaC family |
Gene: LAF_1456: Predicted tyrosine transporter, NhaC family |
*2
Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -305 score = 78.05 sequence = TAATTCTAATGGAAC... Gene: LSL_0931: Predicted tyrosine transporter, NhaC family Site: position = -317 score = 58.24 sequence = TCTTATTAATGATTT... Gene: LSL_0855: Predicted tyrosine transporter, NhaC family |
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Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -305 score = 57.7 sequence = AAAATTCGAGTGATC... Gene: LBUL_1680: Predicted tyrosine transporter, NhaC family |
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Lactobacillus acidophilus NCFM Site: position = -237 score = 68.48 sequence = CAACAATTAACGAAA... Gene: LBA0538: Predicted tyrosine transporter, NhaC family |
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Lactobacillus johnsonii NCC 533 Site: position = -223 score = 59.59 sequence = TAATTATCGTCACAG... Gene: LJ1701: Predicted tyrosine transporter, NhaC family |
*2
Lactobacillus plantarum WCFS1 Site: position = -362 score = 76.07 sequence = TAACTGTACGATAAC... Gene: lp_3338: Predicted tyrosine transporter, NhaC family Site: position = -340 score = 65.35 sequence = ATAACGAACGATAAT... Gene: lp_0192: Predicted tyrosine transporter, NhaC family |
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*2
Lactobacillus brevis ATCC 367 Site: position = -278 score = 59.6 sequence = TAATTTCCATTACCA... Gene: LVIS_0199: Predicted tyrosine transporter, NhaC family Gene: LVIS_2211: Predicted tyrosine transporter, NhaC family |
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Lactobacillus sakei subsp. sakei 23K Site: position = -386 score = 61.36 sequence = TCATCTCATTCAAAC... Gene: LSA1827: Predicted tyrosine transporter, NhaC family |
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Pediococcus pentosaceus ATCC 25745 Site: position = -262 score = 64.2 sequence = CATTTTAACTTTCAC... Gene: PEPE_1838: Predicted tyrosine transporter, NhaC family |
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Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -262 score = 64.5 sequence = CATAAATACTAAGTA... Gene: LEUM_2006: Predicted tyrosine transporter, NhaC family |
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Predicted tyrosine transporter, NhaC family |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |