Regulog T-box(Thr) - Lactobacillaceae
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Thr-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By RNA motif - T-box
- By effector - Thr-tRNA
- By pathway - Amino acid metabolism
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| thrS |
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Oenococcus oeni PSU-1 Site: position = -211 score = 63.56 sequence = TAAACATCGAGACCA... Gene: OEOE_0460: Threonyl-tRNA synthetase (EC 6.1.1.3) |
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Lactobacillus reuteri JCM 1112 Site: position = -199 score = 62.26 sequence = TCGATTGAAGGATAT... Gene: LAR_1745: Threonyl-tRNA synthetase (EC 6.1.1.3) |
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Lactobacillus helveticus DPC 4571 Site: position = -253 score = 37.77 sequence = ATAATGAGAGTTAAT... Gene: lhv_1611: Threonyl-tRNA synthetase (EC 6.1.1.3) |
*
Lactobacillus fermentum IFO 3956 Site: position = -169 score = 57.27 sequence = CAAATGCGGGATACG... Gene: LAF_1830: Threonyl-tRNA synthetase (EC 6.1.1.3) |
*
Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -263 score = 50.8 sequence = TGTAGATTTTGTGAA... Gene: LSL_0494: Threonyl-tRNA synthetase (EC 6.1.1.3) |
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -239 score = 49.57 sequence = AGTAAATAGAAGACA... Gene: LBUL_1401: Threonyl-tRNA synthetase (EC 6.1.1.3) |
*
Lactobacillus acidophilus NCFM Site: position = -240 score = 36.89 sequence = ATTGAAATTAATTAA... Gene: LBA1543: Threonyl-tRNA synthetase (EC 6.1.1.3) |
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Lactobacillus johnsonii NCC 533 Site: position = -238 score = 40.3 sequence = AAAGTCAATGAAAGA... Gene: LJ1645: Threonyl-tRNA synthetase (EC 6.1.1.3) |
*
Lactobacillus plantarum WCFS1 Site: position = -295 score = 65.29 sequence = GAAAACAGATGCAAA... Gene: lp_1514: Threonyl-tRNA synthetase (EC 6.1.1.3) |
*
Lactobacillus casei ATCC 334 Site: position = -262 score = 59.72 sequence = GAAGCTATCGAAGAC... Gene: LSEI_1703: Threonyl-tRNA synthetase (EC 6.1.1.3) |
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Lactobacillus brevis ATCC 367 Site: position = -280 score = 60.16 sequence = CAAAAGAGCTATGAC... Gene: LVIS_1036: Threonyl-tRNA synthetase (EC 6.1.1.3) |
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Lactobacillus sakei subsp. sakei 23K Site: position = -278 score = 62.99 sequence = GAGTCAATCAACGAT... Gene: LSA1400: Threonyl-tRNA synthetase (EC 6.1.1.3) |
*
Pediococcus pentosaceus ATCC 25745 Site: position = -196 score = 55.7 sequence = TAAAACTTCCCACTT... Gene: PEPE_0694: Threonyl-tRNA synthetase (EC 6.1.1.3) |
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Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -294 score = 96.38 sequence = CAGAAACATTGATAA... Gene: LEUM_0662: Threonyl-tRNA synthetase (EC 6.1.1.3) |
*
Lactobacillus rhamnosus GG Site: position = -320 score = 55.57 sequence = GTAACTATCGAAGAC... Gene: LGG_01754: Threonyl-tRNA synthetase (EC 6.1.1.3) |
Threonyl-tRNA synthetase (EC 6.1.1.3) |
| CRON 2. | ||||||||||||||||
| ansP |
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Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -312 score = 71.36 sequence = TAAAAACGTTGAAGA... Gene: LEUM_0515: Amino acid transporter |
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Amino acid transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |