Regulog T-box(Pro) - Lactobacillaceae
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Pro-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By RNA motif - T-box
- By effector - Pro-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Oenococcus oeni PSU-1 | ||
| Lactobacillus reuteri JCM 1112 | 3 | 1 |
| Lactobacillus helveticus DPC 4571 | ||
| Lactobacillus fermentum IFO 3956 | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | ||
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | ||
| Lactobacillus acidophilus NCFM | ||
| Lactobacillus johnsonii NCC 533 | ||
| Lactobacillus plantarum WCFS1 | ||
| Lactobacillus casei ATCC 334 | 2 | 1 |
| Lactobacillus brevis ATCC 367 | ||
| Lactobacillus sakei subsp. sakei 23K | ||
| Pediococcus pentosaceus ATCC 25745 | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | ||
| Lactobacillus rhamnosus GG | 2 | 1 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| proB |
Gene: OEOE_0947: Glutamate 5-kinase (EC 2.7.2.11) |
*
Lactobacillus reuteri JCM 1112 Site: position = -207 score = 18.36 sequence = ATTTTAATTGTAGAT... Gene: LAR_0335: Glutamate 5-kinase (EC 2.7.2.11) |
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Gene: LAF_1357: Glutamate 5-kinase (EC 2.7.2.11) |
Gene: LSL_1612: Glutamate 5-kinase (EC 2.7.2.11) |
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Gene: lp_0016: Glutamate 5-kinase (EC 2.7.2.11) |
*
Lactobacillus casei ATCC 334 Site: position = -240 score = 40.19 sequence = TACAATTCACTTCAT... Gene: LSEI_2358: Glutamate 5-kinase (EC 2.7.2.11) |
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Gene: LEUM_0294: Glutamate 5-kinase (EC 2.7.2.11) |
*
Lactobacillus rhamnosus GG Site: position = -219 score = 38.57 sequence = CACTTCATCAAGTCA... Gene: LGG_02366: Glutamate 5-kinase (EC 2.7.2.11) |
Glutamate 5-kinase (EC 2.7.2.11) |
| proA |
Gene: OEOE_0948: Gamma-glutamyl phosphate reductase (EC 1.2.1.41) |
Gene: LAR_0334: Gamma-glutamyl phosphate reductase (EC 1.2.1.41) |
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Gene: LAF_1356: Gamma-glutamyl phosphate reductase (EC 1.2.1.41) |
Gene: LSL_1611: Gamma-glutamyl phosphate reductase (EC 1.2.1.41) |
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Gene: lp_0017: Gamma-glutamyl phosphate reductase (EC 1.2.1.41) |
Gene: LSEI_2357: Gamma-glutamyl phosphate reductase (EC 1.2.1.41) |
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Gene: LEUM_0295: Gamma-glutamyl phosphate reductase (EC 1.2.1.41) |
Gene: LGG_02365: Gamma-glutamyl phosphate reductase (EC 1.2.1.41) |
Gamma-glutamyl phosphate reductase (EC 1.2.1.41) |
| proI |
Gene: OEOE_0946: Pyrroline-5-carboxylate reductase (EC 1.5.1.2) |
Gene: LAR_0333: Pyrroline-5-carboxylate reductase (EC 1.5.1.2) |
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Gene: LAF_1394: Pyrroline-5-carboxylate reductase (EC 1.5.1.2) |
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Pyrroline-5-carboxylate reductase (EC 1.5.1.2) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |