Regulog T-box(Phe) - Lactobacillaceae

Properties
Regulator type:	RNA regulatory element
Name:	T-box
RFAM:	RF00230
Regulation mode:
Biological process:	Amino acid metabolism
Effector:	Phe-tRNA
Phylum:	Firmicutes

Member of regulog collections

By taxonomy - Lactobacillaceae
By RNA motif - T-box
By effector - Phe-tRNA
By pathway - Amino acid metabolism

Statistics of regulated genes
Genome	Genes	Operons
Oenococcus oeni PSU-1	2	1
Lactobacillus reuteri JCM 1112	2	1
Lactobacillus helveticus DPC 4571	2	1
Lactobacillus fermentum IFO 3956	2	1
Lactobacillus salivarius subsp. salivarius UCC118	2	1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365	2	1
Lactobacillus acidophilus NCFM	2	1
Lactobacillus johnsonii NCC 533	2	1
Lactobacillus plantarum WCFS1	2	1
Lactobacillus casei ATCC 334	2	1
Lactobacillus brevis ATCC 367	2	1
Lactobacillus sakei subsp. sakei 23K	2	1
Pediococcus pentosaceus ATCC 25745	2	1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293	2	1
Lactobacillus rhamnosus GG	2	1

Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes																Function

CRON 1.
pheS	* Oenococcus oeni PSU-1 Site: position = -243 score = 85.84 sequence = TTAAAAATTTGTGGA... Gene: OEOE_0917: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Lactobacillus reuteri JCM 1112 Site: position = -246 score = 95.6 sequence = ATTAAAAGCGATGAT... Gene: LAR_1151: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Lactobacillus helveticus DPC 4571 Site: position = -247 score = 96.78 sequence = GTTAATTACTGAGAT... Gene: lhv_1581: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Lactobacillus fermentum IFO 3956 Site: position = -246 score = 100.63 sequence = TAAAAAGACAGTGAT... Gene: LAF_1289: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -280 score = 106.96 sequence = TAAAGATGTAGATGG... Gene: LSL_0813: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -258 score = 107.76 sequence = ATTAATTACTAAGAA... Gene: LBUL_1383: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Lactobacillus acidophilus NCFM Site: position = -246 score = 95.59 sequence = ATTAATTACTAAGAT... Gene: LBA1519: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Lactobacillus johnsonii NCC 533 Site: position = -245 score = 101.54 sequence = ATTAAATGCGATGAT... Gene: LJ1625: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Lactobacillus plantarum WCFS1 Site: position = -280 score = 94.29 sequence = TAAAAGCCTTGACGA... Gene: lp_1558: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Lactobacillus casei ATCC 334 Site: position = -298 score = 69.29 sequence = CGTAAAAACGATGAC... Gene: LSEI_1672: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Lactobacillus brevis ATCC 367 Site: position = -291 score = 82.99 sequence = GTTAAAAACGATGAT... Gene: LVIS_1010: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Lactobacillus sakei subsp. sakei 23K Site: position = -242 score = 110.46 sequence = TTTATAGACAAAGAT... Gene: LSA1376: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Pediococcus pentosaceus ATCC 25745 Site: position = -207 score = 87.81 sequence = AAAGCTCGAAGAGTA... Gene: PEPE_0721: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -265 score = 105.85 sequence = AGCATACGATGAATG... Gene: LEUM_0447: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	* Lactobacillus rhamnosus GG Site: position = -293 score = 60.39 sequence = TGTAAAAACAATGAC... Gene: LGG_01718: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)	Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
pheT	Oenococcus oeni PSU-1 Gene: OEOE_0918: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Lactobacillus reuteri JCM 1112 Gene: LAR_1150: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Lactobacillus helveticus DPC 4571 Gene: lhv_1580: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Lactobacillus fermentum IFO 3956 Gene: LAF_1288: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Lactobacillus salivarius subsp. salivarius UCC118 Gene: LSL_0814: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Gene: LBUL_1382: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Lactobacillus acidophilus NCFM Gene: LBA1518: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Lactobacillus johnsonii NCC 533 Gene: LJ1624: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Lactobacillus plantarum WCFS1 Gene: lp_1559: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Lactobacillus casei ATCC 334 Gene: LSEI_1671: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Lactobacillus brevis ATCC 367 Gene: LVIS_1009: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Lactobacillus sakei subsp. sakei 23K Gene: LSA1375: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Pediococcus pentosaceus ATCC 25745 Gene: PEPE_0722: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_0448: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Lactobacillus rhamnosus GG Gene: LGG_01717: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)	Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)

Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.

Red color - the gene is in non-regulated operon.

Gray color - the orthologous gene is absent.

The star symbol - the TFBS is located in upstream region of this gene.

The number - the numeber of homologs (shown only if it is greater than one).

Export
	Regulated Genes	[ Tab delimited format ]	DOWNLOAD
	Regulatory Sites	[ FASTA format ]	DOWNLOAD

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes -- version 3.2 --

Regulog T-box(Phe) - Lactobacillaceae

Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --