Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 3.2 --

Regulog T-box(Phe) - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Phe-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Oenococcus oeni PSU-1 2 1
Lactobacillus reuteri JCM 1112 2 1
Lactobacillus helveticus DPC 4571 2 1
Lactobacillus fermentum IFO 3956 2 1
Lactobacillus salivarius subsp. salivarius UCC118 2 1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 2 1
Lactobacillus acidophilus NCFM 2 1
Lactobacillus johnsonii NCC 533 2 1
Lactobacillus plantarum WCFS1 2 1
Lactobacillus casei ATCC 334 2 1
Lactobacillus brevis ATCC 367 2 1
Lactobacillus sakei subsp. sakei 23K 2 1
Pediococcus pentosaceus ATCC 25745 2 1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 2 1
Lactobacillus rhamnosus GG 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pheS
*
Oenococcus oeni PSU-1

Site:
position = -243
score = 85.84
sequence = TTAAAAATTTGTGGA...

Gene: OEOE_0917: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Lactobacillus reuteri JCM 1112

Site:
position = -246
score = 95.6
sequence = ATTAAAAGCGATGAT...

Gene: LAR_1151: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Lactobacillus helveticus DPC 4571

Site:
position = -247
score = 96.78
sequence = GTTAATTACTGAGAT...

Gene: lhv_1581: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Lactobacillus fermentum IFO 3956

Site:
position = -246
score = 100.63
sequence = TAAAAAGACAGTGAT...

Gene: LAF_1289: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -280
score = 106.96
sequence = TAAAGATGTAGATGG...

Gene: LSL_0813: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -258
score = 107.76
sequence = ATTAATTACTAAGAA...

Gene: LBUL_1383: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Lactobacillus acidophilus NCFM

Site:
position = -246
score = 95.59
sequence = ATTAATTACTAAGAT...

Gene: LBA1519: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Lactobacillus johnsonii NCC 533

Site:
position = -245
score = 101.54
sequence = ATTAAATGCGATGAT...

Gene: LJ1625: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Lactobacillus plantarum WCFS1

Site:
position = -280
score = 94.29
sequence = TAAAAGCCTTGACGA...

Gene: lp_1558: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Lactobacillus casei ATCC 334

Site:
position = -298
score = 69.29
sequence = CGTAAAAACGATGAC...

Gene: LSEI_1672: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Lactobacillus brevis ATCC 367

Site:
position = -291
score = 82.99
sequence = GTTAAAAACGATGAT...

Gene: LVIS_1010: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -242
score = 110.46
sequence = TTTATAGACAAAGAT...

Gene: LSA1376: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -207
score = 87.81
sequence = AAAGCTCGAAGAGTA...

Gene: PEPE_0721: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -265
score = 105.85
sequence = AGCATACGATGAATG...

Gene: LEUM_0447: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Lactobacillus rhamnosus GG

Site:
position = -293
score = 60.39
sequence = TGTAAAAACAATGAC...

Gene: LGG_01718: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
pheT
 
Oenococcus oeni PSU-1

Gene: OEOE_0918: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Lactobacillus reuteri JCM 1112

Gene: LAR_1150: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Lactobacillus helveticus DPC 4571

Gene: lhv_1580: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Lactobacillus fermentum IFO 3956

Gene: LAF_1288: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_0814: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_1382: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Lactobacillus acidophilus NCFM

Gene: LBA1518: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Lactobacillus johnsonii NCC 533

Gene: LJ1624: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Lactobacillus plantarum WCFS1

Gene: lp_1559: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Lactobacillus casei ATCC 334

Gene: LSEI_1671: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Lactobacillus brevis ATCC 367

Gene: LVIS_1009: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA1375: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_0722: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_0448: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Lactobacillus rhamnosus GG

Gene: LGG_01717: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD
© 2009-2020 RegPrecise